| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 920377 = | 81 (0.820) | 9 (0.110) | 7/132 | NT | 12.9% | intergenic (+6/‑207) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 920443 = | 55 (0.680) | intergenic (+72/‑141) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein | |||||
CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/920480‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTT > USA300TCH1516_ALE/920443‑920530 CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCT < 1:2977151/91‑1CTTGATGTTTTCGTTCGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCT < 1:968119/91‑1 TTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGTAATCCACAAAAATAGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTT < 1:3852091/91‑1 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTT > 1:3251327/1‑91 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTT > 1:3250783/1‑91 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTT < 1:224881/91‑1 TGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGT > 1:2819334/1‑91 TGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGT > 1:588334/1‑91 TGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGT > 1:2818900/1‑91 GTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTG > 1:2104496/1‑91 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGG < 1:4039116/91‑1 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGG < 1:3978128/91‑1 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGG < 1:3279934/91‑1 TTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGA < 1:3269682/91‑1 TTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGAT > 1:2509149/1‑91 TCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATT > 1:72240/1‑91 CGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTG > 1:4118828/1‑91 GTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGC > 1:2796900/1‑91 AAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAA > 1:2994935/1‑91 CCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAA > 1:2999811/1‑91 AAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCA > 1:4052200/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAA > 1:2778056/1‑91 ATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC > 1:4099234/1‑91 GGCAAGCACTAAAATAATGTTTGGGGGTGCTTGCC‑ATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCT > 1:2780430/1‑91 GGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTG > 1:717851/1‑91 GGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTG > 1:456166/1‑91 AAAATAATGTTTGGGGGTGCTTG‑TCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCC > 1:1370495/1‑91 TTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATC > 1:2550148/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 1:1859724/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 1:93031/1‑91 TTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAA > 1:1860903/1‑91 TTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAA > 1:1859644/1‑91 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:2794135/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:3505964/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:2149698/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:2148498/91‑1 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:173360/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:172633/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT < 1:1996575/91‑1 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT < 1:959874/91‑1 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA > 1:3483856/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA < 1:2535885/91‑1 GGATTGCGTATCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACAACAAACTA > 1:2083827/1‑91 GGATTGCGTATCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACAACAAACTA > 1:2083669/1‑91 GATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATGAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAA > 1:3600525/1‑91 GATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAA > 1:3600238/1‑91 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 1:1226240/91‑1 GCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTT > 1:1145954/1‑91 GCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTT > 1:2689588/1‑91 CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTG‑T‑GCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/920480‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTT > USA300TCH1516_ALE/920443‑920530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |