| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1087705 = | 76 (0.770) | 16 (0.180) | 10/148 | NT | 19.1% | intergenic (‑23/+561) | ykoE/USA300TCH1516_01011 | Putative HMP/thiamine permease protein YkoE/hypothetical protein |
| ? | USA300TCH1516_ALE | 1087738 = | 65 (0.710) | intergenic (‑56/+528) | ykoE/USA300TCH1516_01011 | Putative HMP/thiamine permease protein YkoE/hypothetical protein | |||||
GATCTAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1087800‑1087705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgttCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGCC > USA300TCH1516_ALE/1087738‑1087826 GATCTAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATGACTTTCCTATGGATGGTTGT < 1:1904791/91‑1GATCTAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGT < 1:850449/91‑1GATCGAGCTTGAACTAGCGTAGGAAAGTGTTACTATTCATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGT < 1:1900952/91‑1 ATCTAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTG < 1:3701794/91‑1 ATCTAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTG > 1:3031210/1‑91 TAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTGCGT < 1:2338906/91‑1 TAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTGCGT > 1:253137/1‑91 TAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTGCGT > 1:3805471/1‑91 ACGCATAACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTA > 1:1640196/1‑91 CGCATAACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAG > 1:2198024/1‑91 GCATAACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACCCTTTCCTACGCTAGTTCAAGCTAGA > 1:261742/1‑91 GCATAACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGA > 1:261458/1‑91 CATAACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGAT > 1:3247418/1‑91 TAACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCA > 1:3339724/1‑91 ACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGG > 1:1501648/1‑91 ACTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGG > 1:3100991/1‑91 CTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGT > 1:1231984/1‑91 CTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGT > 1:2118391/1‑91 CTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGT > 1:2117851/1‑91 CTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGT > 1:2117722/1‑91 CTTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCATACGCTAGTTCAAGCTAGATCAGGT > 1:3874766/1‑91 TTTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTT > 1:2299671/1‑91 TTCCTATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTC > 1:2780052/1‑91 ATGGATGGTTGTGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGG > 1:1324039/1‑91 TGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGctt < 1:1415546/91‑4 TGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCA < 1:957836/91‑1 TGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCA < 1:957709/91‑1 TGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCA > 1:1180856/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGTTTTGAGGGCAA > 1:1385915/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGcttg < 1:4116101/91‑5 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAA > 1:2762977/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAA > 1:932296/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAA > 1:2601594/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAA > 1:1286099/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAA > 1:1476266/1‑91 GCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAA > 1:2763013/1‑91 CGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGAGCAGGTTCAAAGGGTTTGAGGGCAAG > 1:3872226/1‑91 GTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGC < 1:3706408/91‑1 GTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGC < 1:73387/91‑1 GTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGC < 1:3705737/91‑1 TTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGCC < 1:861704/91‑1 TTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGCC < 1:2389410/91‑1 GATCTAGCTTGAACTAGCGTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1087800‑1087705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgttCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGCTAGATCAGGTTCAAAGGGTTTGAGGGCAAGCC > USA300TCH1516_ALE/1087738‑1087826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |