| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1087705 = | 76 (0.770) | 16 (0.180) | 10/148 | NT | 19.1% | intergenic (‑23/+561) | ykoE/USA300TCH1516_01011 | Putative HMP/thiamine permease protein YkoE/hypothetical protein |
| ? | USA300TCH1516_ALE | 1087738 = | 65 (0.710) | intergenic (‑56/+528) | ykoE/USA300TCH1516_01011 | Putative HMP/thiamine permease protein YkoE/hypothetical protein | |||||
Only 100 of 126 total aligned reads displayed.
ATAACTGCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGC > USA300TCH1516_ALE/1087615‑1087794 | aTAACTGCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATaaaaaa > 1:119538/1‑91 (MQ=255) tAACTGCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATaaaaaaa < 1:1922492/91‑1 (MQ=255) ggcttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgaa < 1:2389410‑M1/2‑1 (MQ=255) ggcttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgaa < 1:861704‑M1/2‑1 (MQ=255) gcttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAAc < 1:3705737‑M1/3‑1 (MQ=255) gcttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAAc < 1:3706408‑M1/3‑1 (MQ=255) gcttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAAc < 1:73387‑M1/3‑1 (MQ=255) ttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGc > 1:932296‑M1/87‑91 (MQ=255) ttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGc > 1:1286099‑M1/87‑91 (MQ=255) ttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGc > 1:2601594‑M1/87‑91 (MQ=255) ttgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGc > 1:2763013‑M1/87‑91 (MQ=255) caagcctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGc < 1:4116101‑M1/5‑1 (MQ=255) cTGCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGc < 1:3340271/91‑1 (MQ=255) tgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGca < 1:957836‑M1/6‑1 (MQ=255) tgccctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGca < 1:957709‑M1/6‑1 (MQ=255) tGCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGca < 1:9120/91‑1 (MQ=255) aagcctcaaaccctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGca < 1:1415546‑M1/6‑1 (MQ=255) gCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGcac < 1:1884014/91‑1 (MQ=255) gCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGcac < 1:2910656/91‑1 (MQ=255) cGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGcaca < 1:3507057/91‑1 (MQ=255) gAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACaa < 1:612476/91‑1 (MQ=255) gAATACTACTGAAATAAGTACGATTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATATAAAAACGCACaa > 1:3711541/1‑91 (MQ=255) aTACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAcc > 1:3674081/1‑91 (MQ=255) ctactGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAccatc > 1:4050971/1‑91 (MQ=255) tactGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAccatcc > 1:3948999/1‑91 (MQ=255) tactGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAccatcc < 1:3335563/91‑1 (MQ=255) actGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAccatcca < 1:1627859/91‑1 (MQ=255) actGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAccatcca < 1:1628135/91‑1 (MQ=255) ctGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAAccatccat < 1:2471349/91‑1 (MQ=255) cctttgaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAAccatccat > 1:1324039‑M1/75‑91 (MQ=255) tGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATa < 1:543979/91‑1 (MQ=255) gAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAg < 1:2741737/91‑1 (MQ=255) aaTAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGa < 1:3817947/91‑1 (MQ=255) gaacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGaa > 1:2780052‑M1/70‑91 (MQ=255) aTAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGaa > 1:2496001/1‑91 (MQ=255) aacctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGaaa > 1:2299671‑M1/69‑91 (MQ=255) acctgatctagcttgaactagcgtatgaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAg > 1:3874766‑M1/68‑91 (MQ=255) acctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAg > 1:2117722‑M1/68‑91 (MQ=255) acctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAg > 1:2117851‑M1/68‑91 (MQ=255) acctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAg > 1:1231984‑M1/68‑91 (MQ=255) aaGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAg < 1:961544/91‑1 (MQ=255) aaGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAg < 1:1747492/91‑1 (MQ=255) cctgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGt > 1:1501648‑M1/67‑91 (MQ=255) gTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGtt > 1:452702/1‑91 (MQ=255) gTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGtt < 1:342612/91‑1 (MQ=255) gTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGtt < 1:1770570/91‑1 (MQ=255) tgatctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGTTa > 1:3339724‑M1/65‑91 (MQ=255) tACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTa > 1:1501944/1‑91 (MQ=255) aCGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTAt < 1:3236224/91‑1 (MQ=255) cGGTTACTAGTATTTCAGATCGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATg > 1:1219541/1‑91 (MQ=255) cGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATg < 1:1084934/91‑1 (MQ=255) atctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGTTATg > 1:3247418‑M1/63‑91 (MQ=255) tctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGTTATGc > 1:261458‑M1/62‑91 (MQ=255) tctagcttgaactagcgtaggaaagggttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGTTATGc > 1:261742‑M1/62‑91 (MQ=255) ggTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGc < 1:3951832/91‑1 (MQ=255) ggTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGc < 1:328952/91‑1 (MQ=255) ctagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGTTATGCg > 1:2198024‑M1/61‑91 (MQ=255) tagcttgaactagcgtaggaaagtgttactatacatatgttttactaatatatattgtgAACGCACAACCATCCATAGGAAAGTTATGCGt > 1:1640196‑M1/60‑91 (MQ=255) tACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGtt < 1:4048181/91‑1 (MQ=255) cTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTca > 1:2743149/1‑91 (MQ=255) tAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTcac > 1:2313731/1‑91 (MQ=255) tAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTcac > 1:42401/1‑91 (MQ=255) aGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTcaca > 1:1113184/1‑91 (MQ=255) gTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACaa > 1:538748/1‑91 (MQ=255) gTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACaa > 1:538598/1‑91 (MQ=255) tATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAat < 1:1070797/91‑1 (MQ=255) tttCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAatat > 1:26841/1‑91 (MQ=255) cAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAatatata < 1:277496/91‑1 (MQ=255) aGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAatatatat > 1:2756075/1‑91 (MQ=255) aTAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTa > 1:4011625/1‑91 (MQ=255) aTAGCTTTAAACCTTTTGACATTTTTACATCCGCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTa < 1:3960433/91‑1 (MQ=255) cTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTaa > 1:3342596/1‑91 (MQ=255) ttAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTaaaa < 1:3433446/91‑1 (MQ=255) ttAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTaaaa > 1:1425535/1‑91 (MQ=255) ttAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTaaaa < 1:3012971/91‑1 (MQ=255) ccTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACatat > 1:3662594/1‑91 (MQ=255) ccTTTTGACAGTTTTACATCCTCCTAATAGAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACatat < 1:1614294/91‑1 (MQ=255) tGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGtata < 1:1760598/91‑1 (MQ=255) aCATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGt < 1:3836037/91‑1 (MQ=255) aTTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTaa < 1:2897610/91‑1 (MQ=255) aTTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTaa > 1:2211331/1‑91 (MQ=255) tttttACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAac > 1:1035816/1‑91 (MQ=255) ttttACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAaca > 1:895822/1‑91 (MQ=255) cATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTc > 1:1670198/1‑91 (MQ=255) aTCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTcc < 1:3023617/91‑1 (MQ=255) aTCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTcc < 1:1333813/91‑1 (MQ=255) tcctccTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCt > 1:1302412/1‑91 (MQ=255) tcctccTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGCTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCt > 1:1300835/1‑91 (MQ=255) cctcctAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTa > 1:3166144/1‑91 (MQ=255) tcctAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACg < 1:550337/91‑1 (MQ=255) taaAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGtt < 1:2680239/91‑1 (MQ=255) aaaaaaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTc > 1:1420992/1‑91 (MQ=255) aaaaaaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTc < 1:1861741/91‑1 (MQ=255) aaaaaaCGCACAACCATCCATAGGAAAGTTATGCGTTGACAATATATATTACTAAAACATATGTAGAGTAACACTTTCCTACGCTAGTTCa > 1:3853875/1‑91 (MQ=255) aaaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAg > 1:1415403/1‑91 (MQ=255) aaaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAg < 1:2819559/91‑1 (MQ=255) aaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGc < 1:1728184/91‑1 (MQ=255) aaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGc < 1:1728043/91‑1 (MQ=255) aaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGc < 1:1646268/91‑1 (MQ=255) aaaCGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGc > 1:1586638/1‑91 (MQ=255) | ATAACTGCGAATACTACTGAAATAAGTACGGTTACTAGTATTTCAGATAGCTTTAAACCTTTTGACATTTTTACATCCTCCTAATAAAAAAACGCACAACCATCCATAGGAAAGTTATGCGTTCACAATATATATTAGTAAAACATATGTATAGTAACACTTTCCTACGCTAGTTCAAGC > USA300TCH1516_ALE/1087615‑1087794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |