| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1129293 = | 63 (0.640) | 5 (0.060) | 4/144 | NT | 7.5% | intergenic (+71/‑256) | USA300HOU_RS05575/USA300HOU_RS05585 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1129331 = | 67 (0.760) | intergenic (+109/‑218) | USA300HOU_RS05575/USA300HOU_RS05585 | hypothetical protein/hypothetical protein | |||||
CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1129390‑1129293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTT > USA300TCH1516_ALE/1129331‑1129418 CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCA < 1:569292/91‑1CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCA < 1:569207/91‑1CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCA < 1:569194/91‑1CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCA < 1:3776837/91‑1CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCA < 1:3632878/91‑1CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCA < 1:2402544/91‑1 ATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACT < 1:1177102/91‑1 ATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACT < 1:3125245/91‑1 ATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACT > 1:1523901/1‑91 CTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACTGT < 1:1267584/91‑1 TTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACTGTC < 1:1787063/91‑1 TTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACTGTC > 1:1645895/1‑91 GACAGTTAAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAA > 1:1376350/1‑91 ACAGTTAAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAG > 1:1063710/1‑91 GTTAAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATA > 1:2052634/1‑91 GTTAAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATA > 1:2980211/1‑91 TAAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGG > 1:1957682/1‑91 ACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAA > 1:2259656/1‑91 CTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAAT < 1:2036072/91‑1 GTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCT > 1:2106400/1‑91 TCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTT > 1:2378021/1‑91 CCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTAAGGTATCAAATGAATACCATCAACTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1129390‑1129293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTT > USA300TCH1516_ALE/1129331‑1129418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |