New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1129293 =	63 (0.640)	5 (0.060)	4/144	NT	7.5%	intergenic (+71/‑256)	USA300HOU_RS05575/USA300HOU_RS05585	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	1129331 =	67 (0.760)					intergenic (+109/‑218)	USA300HOU_RS05575/USA300HOU_RS05585	hypothetical protein/hypothetical protein

ACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTT  >  USA300TCH1516_ALE/1129241‑1129418                                                                                           |                                                                                        aCTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCa                                                                                         <  1:1935980/91‑1 (MQ=255)  cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCGTTTGATACCTTAACTGTCCAt                                                                                        >  1:1008632/1‑91 (MQ=255)  cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAt                                                                                        >  1:505923/1‑91 (MQ=255)  cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAt                                                                                        <  1:3578993/91‑1 (MQ=255)   tAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtt                                                                                       >  1:3716286/1‑91 (MQ=255)    aaTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttt                                                                                      >  1:865334/1‑91 (MQ=255)     aTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttt                                                                                     >  1:13754/1‑91 (MQ=255)        tGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttttttt                                                                                  <  1:102528/91‑1 (MQ=255)          aTAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTtat                                                                                >  1:2617621/1‑91 (MQ=255)            aaGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATAc                                                                              >  1:980813/1‑91 (MQ=255)            aaGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATAc                                                                              <  1:2584945/91‑1 (MQ=255)            aaGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATAc                                                                              >  1:1125117/1‑91 (MQ=255)             aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACa                                                                             >  1:2824736/1‑91 (MQ=255)             aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACa                                                                             <  1:1308168/91‑1 (MQ=255)              ggCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACat                                                                            >  1:1861125/1‑91 (MQ=255)              ggCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACat                                                                            >  1:4007653/1‑91 (MQ=255)                 aaTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtt                                                                         <  1:2769193/91‑1 (MQ=255)                  aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                        <  1:2290082/91‑1 (MQ=255)                  aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                        <  1:1459183/91‑1 (MQ=255)                  aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                        <  1:2290372/91‑1 (MQ=255)                   tttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtttt                                                                       >  1:1954375/1‑91 (MQ=255)                    ttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTa                                                                      <  1:3664187/91‑1 (MQ=255)                         ttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                                 >  1:3984581/1‑91 (MQ=255)                         ttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                                 <  1:35983/91‑1 (MQ=255)                           aTCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATAGTATTCATTTGATACCTTAACTGTCCAATTTTTTATACATATTTTAACCTtaa                                                               >  1:3865078/1‑91 (MQ=255)                            tCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTtaat                                                              <  1:3421109/91‑1 (MQ=255)                            tCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTtaat                                                              >  1:1151149/1‑91 (MQ=255)                               ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                           <  1:9794/91‑1 (MQ=255)                               ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                           >  1:512526/1‑91 (MQ=255)                               ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                           <  1:1699363/91‑1 (MQ=255)                                gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                          <  1:2951217/91‑1 (MQ=255)                                gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                          >  1:819073/1‑91 (MQ=255)                                gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                          <  1:273583/91‑1 (MQ=255)                                     ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                                     >  1:2739498/1‑91 (MQ=255)                                     ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                                     >  1:1041856/1‑91 (MQ=255)                                     ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                                     >  1:1041855/1‑91 (MQ=255)                                       gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATATTGAACTTCa                                                   >  1:401830/1‑91 (MQ=255)                                       gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCa                                                   <  1:2872262/91‑1 (MQ=255)                                       gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCa                                                   >  1:527419/1‑91 (MQ=255)                                       gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCa                                                   >  1:401744/1‑91 (MQ=255)                                        atgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCaa                                                  <  1:748600/91‑1 (MQ=255)                                        atgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCaa                                                  <  1:1115956/91‑1 (MQ=255)                                          gaagaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAcc                                                >  1:880308/1‑91 (MQ=255)                                          gaagaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAcc                                                <  1:2313797/91‑1 (MQ=255)                                          gaagaaTAGTCGGACAGTTGATGGTACTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAcc                                                <  1:2314133/91‑1 (MQ=255)                                            agaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTg                                              >  1:3405782/1‑91 (MQ=255)                                             gaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGa                                             <  1:942578/91‑1 (MQ=255)                                               aTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGaaa                                           >  1:1733144/1‑91 (MQ=255)                                                tAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGaaaa                                          >  1:442903/1‑91 (MQ=255)                                                   tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAGACAt                                       >  1:3463098/1‑91 (MQ=255)                                                   tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                       >  1:4123110/1‑91 (MQ=255)                                                   tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                       >  1:3831592/1‑91 (MQ=255)                                                   tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                       >  1:1116197/1‑91 (MQ=255)                                                   tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                       <  1:1181814/91‑1 (MQ=255)                                                   tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                       >  1:4123464/1‑91 (MQ=255)                                                      gacagttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                    >  1:1376350‑M2/38‑91 (MQ=255)                                                      GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                    >  1:1645895‑M1/1‑91 (MQ=255)                                                      GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                    <  1:1787063‑M1/91‑1 (MQ=255)                                                       acagttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                                   >  1:1063710‑M2/37‑91 (MQ=255)                                                       ACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                                   <  1:1267584‑M1/91‑1 (MQ=255)                                                         AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                                 <  1:3125245‑M1/91‑1 (MQ=255)                                                         AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                                 >  1:1523901‑M1/1‑91 (MQ=255)                                                         AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                                 <  1:1177102‑M1/91‑1 (MQ=255)                                                          gttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATa                                >  1:2980211‑M2/34‑91 (MQ=255)                                                          gttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATa                                >  1:2052634‑M2/34‑91 (MQ=255)                                                            taaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              >  1:1957682‑M2/32‑91 (MQ=255)                                                            TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              <  1:569292‑M1/91‑1 (MQ=255)                                                            TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              <  1:569207‑M1/91‑1 (MQ=255)                                                            TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              <  1:569194‑M1/91‑1 (MQ=255)                                                            TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              <  1:2402544‑M1/91‑1 (MQ=255)                                                            TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              <  1:3776837‑M1/91‑1 (MQ=255)                                                            TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                              <  1:3632878‑M1/91‑1 (MQ=255)                                                             gATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGt                             <  1:4121954/91‑1 (MQ=255)                                                             gATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGt                             <  1:1823237/91‑1 (MQ=255)                                                             gATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGt                             <  1:1823135/91‑1 (MQ=255)                                                               tGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTa                           <  1:789960/91‑1 (MQ=255)                                                                  tATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGa                        <  1:1919213/91‑1 (MQ=255)                                                                    ttCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGata                      >  1:1069297/1‑91 (MQ=255)                                                                     tCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGatat                     <  1:3608920/91‑1 (MQ=255)                                                                     tCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGatat                     <  1:1662512/91‑1 (MQ=255)                                                                      cATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGAtata                    <  1:1164501/91‑1 (MQ=255)                                                                      cATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGAtata                    >  1:3223785/1‑91 (MQ=255)                                                                      cATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGAtata                    >  1:3129738/1‑91 (MQ=255)                                                                       aTTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATag                   >  1:1479424/1‑91 (MQ=255)                                                                       aTTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAAGAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATag                   >  1:4137002/1‑91 (MQ=255)                                                                          tGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgt                <  1:1256842/91‑1 (MQ=255)                                                                           gATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtg               >  1:1502700/1‑91 (MQ=255)                                                                           gATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtg               <  1:1674326/91‑1 (MQ=255)                                                                            aTACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtgt              >  1:30656/1‑91 (MQ=255)                                                                            aTACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtgt              >  1:1585985/1‑91 (MQ=255)                                                                             tACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTa             >  1:1868517/1‑91 (MQ=255)                                                                              aCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAg            >  1:3807806/1‑91 (MQ=255)                                                                              aCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAg            <  1:2133787/91‑1 (MQ=255)                                                                                cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg          <  1:2373132/91‑1 (MQ=255)                                                                                 ttAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGa         <  1:3916804/91‑1 (MQ=255)                                                                                  tAACTGACCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaa        >  1:3226836/1‑91 (MQ=255)                                                                                    actgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaaaa      >  1:2259656‑M2/8‑91 (MQ=255)                                                                                     ctgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAAt     <  1:2036072‑M2/85‑1 (MQ=255)                                                                                       gtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCt   >  1:2106400‑M2/5‑91 (MQ=255)                                                                                        tccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCtt  >  1:2378021‑M2/4‑91 (MQ=255)                                                                                           |                                                                                        ACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTT  >  USA300TCH1516_ALE/1129241‑1129418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.