| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1131036 = | 91 (0.930) | 8 (0.100) | 7/126 | NT | 11.2% | coding (435/435 nt) | USA300HOU_RS05590 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1131101 = | 55 (0.710) | coding (925/927 nt) | glpQ1 | putative glycerophosphodiester phosphodiesterase 1 | |||||
AGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1131141‑1131036‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTC > USA300TCH1516_ALE/1131101‑1131189 AGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTC > 1:364410/1‑91AGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTC < 1:31060/91‑1AGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTC > 1:2178997/1‑91 GATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCT > 1:3695583/1‑91 ATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTG > 1:2701813/1‑91 GCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCG < 1:1175806/91‑1 GCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCG < 1:942279/91‑1 GCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCG < 1:943398/91‑1 GCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCG < 1:961844/91‑1 GCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCG < 1:1269890/91‑1 ACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGAT < 1:1747029/91‑1 ACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGAT < 1:2642808/91‑1 ACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGAT < 1:3053683/91‑1 ATTCAAGCAAACAATCCCGAGTAGATAAAGACGTCGAGTCGGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCGGACTCGATGTTTTT < 1:629315/91‑1 ATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT < 1:1207300/91‑1 AAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGATTGTTTGAATT > 1:3761467/1‑91 AGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTA > 1:1671074/1‑91 GTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAA > 1:3056307/1‑91 AGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATC > 1:3918447/1‑91 GATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGCTTGTTTGTTTGAATTGTTGTGCTAAATCT > 1:141870/1‑91 ATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTG > 1:1697816/1‑91 ATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTG > 1:1697825/1‑91 TAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCT > 1:1506164/1‑91 TCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTT < 1:287335/91‑1 TCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTT < 1:286942/91‑1 TGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTG > 1:1832670/1‑91 TGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTG > 1:842888/1‑91 GACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGG < 1:3259011/91‑1 ACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGT < 1:1963219/91‑1 TCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTAT < 1:967635/91‑1 ATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAA > 1:1176059/1‑91 TTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCAT < 1:2990486/91‑1 TTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCAT < 1:2990426/91‑1 TTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTC < 1:815034/91‑1 AGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1131141‑1131036‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTC > USA300TCH1516_ALE/1131101‑1131189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |