BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1131036 =	91 (0.930)	8 (0.100)	7/126	NT	11.2%	coding (435/435 nt)	USA300HOU_RS05590	hypothetical protein
*	?	USA300TCH1516_ALE	1131101 =	55 (0.710)	8 (0.100)	7/126	NT	11.2%	coding (925/927 nt)	glpQ1	putative glycerophosphodiester phosphodiesterase 1

Only 100 of 104 total aligned reads displayed.

GCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCAT  >  USA300TCH1516_ALE/1131011‑1131191

gCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTttta                                                                                            >  1:2407771/1‑91 (MQ=255)

gCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTttta                                                                                            <  1:3786597/91‑1 (MQ=255)

gCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTttta                                                                                            <  1:2588150/91‑1 (MQ=255)

 cGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttat                                                                                           >  1:2729578/1‑91 (MQ=255)

 cGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttat                                                                                           >  1:639068/1‑91 (MQ=255)

    aTCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttattta                                                                                        >  1:3406441/1‑91 (MQ=255)

    aTCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttattta                                                                                        <  1:1289705/91‑1 (MQ=255)

    aTCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttattta                                                                                        <  1:1442306/91‑1 (MQ=255)

        tGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCg                                                                                    <  1:3150640/91‑1 (MQ=255)

         gTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCgg                                                                                   >  1:598894/1‑91 (MQ=255)

         gTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCgg                                                                                   >  1:599194/1‑91 (MQ=255)

          tAATTGTTCATTATAAAAAACATCGAGTCAGAACAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCggg                                                                                  <  1:3393697/91‑1 (MQ=255)

          tAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCggg                                                                                  <  1:2114535/91‑1 (MQ=255)

          tAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCggg                                                                                  >  1:1622847/1‑91 (MQ=255)

          tAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCggg                                                                                  <  1:574879/91‑1 (MQ=255)

           aaTTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGa                                                                                 >  1:4124523/1‑91 (MQ=255)

           aaTTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGa                                                                                 >  1:4124628/1‑91 (MQ=255)

            aTTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAt                                                                                <  1:834297/91‑1 (MQ=255)

            aTTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAt                                                                                <  1:3658550/91‑1 (MQ=255)

            aTTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATCGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAt                                                                                <  1:4145382/91‑1 (MQ=255)

              tGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAAGTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttg                                                                              <  1:3497279/91‑1 (MQ=255)

              tGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttg                                                                              <  1:2981065/91‑1 (MQ=255)

               gTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgt                                                                             <  1:457543/91‑1 (MQ=255)

               gTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgt                                                                             <  1:2364091/91‑1 (MQ=255)

                ttCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtt                                                                            >  1:448990/1‑91 (MQ=255)

                 tCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgttt                                                                           >  1:4084141/1‑91 (MQ=255)

                 tCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgttt                                                                           >  1:3977914/1‑91 (MQ=255)

                  cATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttg                                                                          <  1:173773/91‑1 (MQ=255)

                  cATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACAAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttg                                                                          >  1:3283849/1‑91 (MQ=255)

                  cATTATAAAAAACATCGAGTCAGAAAAAGGTGGGTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttg                                                                          <  1:3681285/91‑1 (MQ=255)

                  cATTATAAAAAACATCGAGGCAGAAAAAGGTGGTCATTGAAACCACTAACTAGCATCTGCCTCGGTGTTTTTATTTATTCGGGCttgtttg                                                                          >  1:1481698/1‑91 (MQ=255)

                   aTTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttgt                                                                         <  1:1320079/91‑1 (MQ=255)

                    ttATAACAAACCTCGAGTCAGAAAAAGGTGGTTATTGATCCCACTCACTCGCATCTCACTCGATGTCTTTATTTCTTCGGGCTtgtttgtt                                                                        <  1:1235944/91‑1 (MQ=255)

                    ttATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATtgtttgtt                                                                        <  1:2437669/91‑1 (MQ=255)

                      ataAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGtttgtttg                                                                      <  1:164371/91‑1 (MQ=255)

                      ataAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGtttgtttg                                                                      <  1:2834618/91‑1 (MQ=255)

                       taAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGa                                                                     <  1:458533/91‑1 (MQ=255)

                         AAAAACATCGAGTCCGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCCGACTCGACGTCTTTATCTACTCGGGATTGTTTGCTTGAAt                                                                   <  1:629315‑M1/91‑1 (MQ=255)

                         AAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAAt                                                                   <  1:1207300‑M1/91‑1 (MQ=255)

                               ATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATtgttgt                                                             <  1:2642808‑M1/91‑1 (MQ=255)

                               ATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATtgttgt                                                             <  1:3053683‑M1/91‑1 (MQ=255)

                               ATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATtgttgt                                                             <  1:1747029‑M1/91‑1 (MQ=255)

                                 CGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGc                                                           <  1:1175806‑M1/91‑1 (MQ=255)

                                 CGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGc                                                           <  1:961844‑M1/91‑1 (MQ=255)

                                 CGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGc                                                           <  1:1269890‑M1/91‑1 (MQ=255)

                                 CGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGc                                                           <  1:942279‑M1/91‑1 (MQ=255)

                                 CGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGc                                                           <  1:943398‑M1/91‑1 (MQ=255)

                                   agtcagatgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTa                                                         >  1:1671074‑M2/56‑91 (MQ=255)

                                    gtcagatgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTaa                                                        >  1:3056307‑M2/55‑91 (MQ=255)

                                      CAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAAt                                                      >  1:2701813‑M1/1‑91 (MQ=255)

                                       agatgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATc                                                     >  1:3918447‑M2/52‑91 (MQ=255)

                                       AGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATc                                                     >  1:3695583‑M1/1‑91 (MQ=255)

                                        gatgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGCTTGTTTGTTTGAATTGTTGTGCTAAATCt                                                    >  1:141870‑M2/51‑91 (MQ=255)

                                        GAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCt                                                    >  1:364410‑M1/1‑91 (MQ=255)

                                        GAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCt                                                    >  1:2178997‑M1/1‑91 (MQ=255)

                                        GAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCt                                                    <  1:31060‑M1/91‑1 (MQ=255)

                                         atgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTg                                                   >  1:1697816‑M2/50‑91 (MQ=255)

                                         atgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTg                                                   >  1:1697825‑M2/50‑91 (MQ=255)

                                          aaaaGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTgg                                                  >  1:2371969/1‑91 (MQ=255)

                                           aaaGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGt                                                 <  1:3802171/91‑1 (MQ=255)

                                            aaGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTc                                                <  1:1857877/91‑1 (MQ=255)

                                              ggtggtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGa                                              >  1:2623403/1‑91 (MQ=255)

                                              ggtggtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAGTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGa                                              >  1:2626416/1‑91 (MQ=255)

                                                 tagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCt                                           >  1:1506164‑M2/42‑91 (MQ=255)

                                                 ggtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCt                                           >  1:309065/1‑91 (MQ=255)

                                                  gtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTg                                          >  1:535518/1‑91 (MQ=255)

                                                  gtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTg                                          >  1:1693450/1‑91 (MQ=255)

                                                  gtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTg                                          <  1:1789293/91‑1 (MQ=255)

                                                  gtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTg                                          <  1:1789277/91‑1 (MQ=255)

                                                  gtTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTg                                          >  1:66010/1‑91 (MQ=255)

                                                    tATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTc                                        <  1:1285619/91‑1 (MQ=255)

                                                     aTTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTca                                       <  1:927933/91‑1 (MQ=255)

                                                         aaaCCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAAt                                   >  1:2303729/1‑91 (MQ=255)

                                                         aaaCCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAAt                                   <  1:2410038/91‑1 (MQ=255)

                                                           aCCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCg                                 >  1:2459199/1‑91 (MQ=255)

                                                               ctaactaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCgtgtg                             >  1:2088778/1‑91 (MQ=255)

                                                                 aactaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGtgtgtg                           <  1:2676776/91‑1 (MQ=255)

                                                                 aactaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGtgtgtg                           >  1:1325621/1‑91 (MQ=255)

                                                                  actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                          <  1:2891543/91‑1 (MQ=255)

                                                                  actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                          <  1:3666558/91‑1 (MQ=255)

                                                                  actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                          <  1:3433705/91‑1 (MQ=255)

                                                                  actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                          <  1:3433597/91‑1 (MQ=255)

                                                                  actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                          >  1:2120019/1‑91 (MQ=255)

                                                                   ctaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACTATCGTGTGTGCa                         <  1:3182552/91‑1 (MQ=255)

                                                                    taGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCAc                        <  1:1321226/91‑1 (MQ=255)

                                                                    taGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCAc                        <  1:2615472/91‑1 (MQ=255)

                                                                     aGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCAcc                       >  1:1355477/1‑91 (MQ=255)

                                                                       cATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCtt                     >  1:186794/1‑91 (MQ=255)

                                                                         tctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCtttt                   <  1:287335‑M2/74‑1 (MQ=255)

                                                                           tgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTg                 >  1:842888‑M2/16‑91 (MQ=255)

                                                                           tgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTg                 >  1:1832670‑M2/16‑91 (MQ=255)

                                                                            gactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTgg                <  1:3259011‑M2/77‑1 (MQ=255)

                                                                             actcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGt               <  1:1963219‑M2/78‑1 (MQ=255)

                                                                                  atgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATaaa          >  1:1176059‑M2/9‑91 (MQ=255)

                                                                                      ttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtcat      <  1:2990486‑M2/87‑1 (MQ=255)

                                                                                      ttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtcat      <  1:2990426‑M2/87‑1 (MQ=255)

                                                                                        ttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtcattc    <  1:815034‑M2/89‑1 (MQ=255)

                                                                                          atttattCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtcattcat  <  1:3239077/91‑1 (MQ=255)

                                                                                          atttattCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtcattcat  >  1:300809/1‑91 (MQ=255)

                                                                                          atttattCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtcattcat  <  1:2299592/91‑1 (MQ=255)

GCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCAT  >  USA300TCH1516_ALE/1131011‑1131191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.