| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456948 = | 147 (1.490) | 16 (0.200) | 9/132 | NT | 13.0% | intergenic (‑62/‑182) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1456990 = | 93 (1.150) | intergenic (‑104/‑140) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein | |||||
CAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457049‑1456948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTA > USA300TCH1516_ALE/1456990‑1457076 CAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGT < 1:1010087/91‑1CAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGT < 1:1709734/91‑1CAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGT > 1:1195153/1‑91 AATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTT > 1:2429268/1‑91 ATGGTAGAATCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTT < 1:3978870/91‑1 ATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTT < 1:994163/91‑1 ATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTT < 1:2191663/91‑1 ATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTT < 1:3090681/91‑1 TAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTG < 1:3830914/91‑1 TAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTG < 1:4106250/91‑1 AGAAGCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGC > 1:3276745/1‑91 AGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGC > 1:1293524/1‑91 AGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGC > 1:1757828/1‑91 AGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGC > 1:3121738/1‑91 ACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTT > 1:1811609/1‑91 ACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTT > 1:2436166/1‑91 CCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT > 1:3566452/1‑91 GCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCT > 1:4034551/1‑91 GCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCT > 1:4034871/1‑91 GTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACC > 1:535168/1‑91 TAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCA > 1:2195649/1‑91 AAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAT > 1:4122404/1‑91 AAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAT > 1:2702180/1‑91 AACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATT > 1:2697348/1‑91 AACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATT > 1:1275526/1‑91 ACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTG > 1:620017/1‑91 ACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTCTTTCGTAAAAAGCAAACCATACGCTCTGCGTATGGTTCAGAAAAGGTTCTACCATTG > 1:3312557/1‑91 CTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGCAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTC > 1:3506365/1‑91 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCA > 1:112870/1‑91 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCA > 1:113188/1‑91 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCA > 1:113622/1‑91 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCA > 1:3595532/1‑91 AAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAACATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC > 1:3283161/1‑91 GGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCT < 1:1682464/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTC < 1:3326149/91‑1 TTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCT > 1:2975004/1‑91 TTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTA > 1:138018/1‑91 TTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTA > 1:137967/1‑91 ACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACG > 1:2110749/1‑91 CTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGT > 1:1132201/1‑91 CTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGT > 1:1132125/1‑91 CTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGT > 1:461043/1‑91 TGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAATGCATCTCTACGT > 1:3418168/1‑91 GCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGC < 1:3729734/91‑1 GCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGC > 1:1713864/1‑91 GCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGC < 1:195475/91‑1 TTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTA < 1:672/91‑1 CAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457049‑1456948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTA > USA300TCH1516_ALE/1456990‑1457076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |