BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	147 (1.490)	16 (0.200)	9/132	NT	13.0%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1456990 =	93 (1.150)	16 (0.200)	9/132	NT	13.0%	intergenic (‑104/‑140)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein

Only 100 of 152 total aligned reads displayed.

CCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTA  >  USA300TCH1516_ALE/1456900‑1457076

ccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTg                                                                                         >  1:2466326/1‑91 (MQ=255)

ccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTg                                                                                         >  1:402795/1‑91 (MQ=255)

ccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTg                                                                                         >  1:402910/1‑91 (MQ=255)

 cTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGt                                                                                        >  1:1577226/1‑91 (MQ=255)

    ttATATGCCCGTAAAAGACAATATATGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                                                                     <  1:125967/91‑1 (MQ=255)

    ttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                                                                     <  1:1006732/91‑1 (MQ=255)

      atatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttttt                                                                                   <  1:541878/91‑1 (MQ=255)

       tatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTg                                                                                  >  1:1324141/1‑91 (MQ=255)

        atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt                                                                                 >  1:2528586/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTCGGTTTACTGCTTTTGTTTTTTGTa                                                                                >  1:285860/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                <  1:2158656/91‑1 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                >  1:640360/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                <  1:885909/91‑1 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                >  1:271762/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                >  1:285828/1‑91 (MQ=255)

          gCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaa                                                                               >  1:3242433/1‑91 (MQ=255)

              gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                                                           <  1:2412272/91‑1 (MQ=255)

               tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACCCTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa                                                                          >  1:1178072/1‑91 (MQ=255)

               tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa                                                                          >  1:1177881/1‑91 (MQ=255)

               ggaaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTCACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa                                                                          <  1:3595822/89‑1 (MQ=255)

                aaaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAGCCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaa                                                                         <  1:4153641/91‑1 (MQ=255)

                 aaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaa                                                                        >  1:1957171/1‑91 (MQ=255)

                   aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc                                                                      >  1:3941/1‑91 (MQ=255)

                   aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc                                                                      <  1:2280068/91‑1 (MQ=255)

                     aCAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa                                                                    >  1:3299434/1‑91 (MQ=255)

                      cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                   >  1:3135512/1‑91 (MQ=255)

                      cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                   >  1:3676312/1‑91 (MQ=255)

                      cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                   >  1:3676299/1‑91 (MQ=255)

                       aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa                                                                  >  1:2431720/1‑91 (MQ=255)

                       aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa                                                                  >  1:2899855/1‑91 (MQ=255)

                         tataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg                                                                >  1:2675716/1‑91 (MQ=255)

                          ataCGTTGTAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                               <  1:2066932/91‑1 (MQ=255)

                          ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                               <  1:1923063/91‑1 (MQ=255)

                          ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                               <  1:1923558/91‑1 (MQ=255)

                          ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                               >  1:2680245/1‑91 (MQ=255)

                           taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGca                                                              <  1:3374539/91‑2 (MQ=255)

                           taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                                                              <  1:767920/91‑1 (MQ=255)

                             cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcata                                                            <  1:465974/91‑4 (MQ=255)

                             cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt                                                            <  1:2483825/91‑1 (MQ=255)

                             cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt                                                            >  1:2424018/1‑91 (MQ=255)

                              gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                           <  1:2945426/91‑5 (MQ=255)

                              gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                           <  1:1045658/91‑5 (MQ=255)

                              gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                           <  1:1045630/91‑5 (MQ=255)

                              gTTATAACAACGTTTTATAAAAGCAGTAAACCCTGACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                           <  1:1577934/91‑5 (MQ=255)

                                  taACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTa                                                      >  1:1366585/1‑91 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg                                                   <  1:1478802/91‑1 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg                                                   <  1:1478758/91‑1 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTCTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg                                                   >  1:3399779/1‑91 (MQ=255)

                                      aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGt                                                  <  1:142682/91‑1 (MQ=255)

                                      aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCATA‑GCGTATGGt                                                  <  1:859243/91‑1 (MQ=39)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACATTTTAGGTTTACTGCTTTTGTGTTTTGTAAAAAGAAAACCATACGCATA‑GCGTATGGtt                                                 <  1:3536362/91‑1 (MQ=38)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt                                                 <  1:3482836/91‑1 (MQ=255)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt                                                 <  1:3481976/91‑1 (MQ=255)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt                                                 >  1:907164/1‑91 (MQ=255)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCATA‑GCGTATGGtt                                                 <  1:1822726/91‑1 (MQ=39)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGC‑ATAGCGTATGGtt                                                 <  1:428089/91‑1 (MQ=39)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGC‑ATAGCGTATGGtt                                                 <  1:2143569/91‑1 (MQ=39)

                                        cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTc                                                >  1:171598/1‑91 (MQ=255)

                                        cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTc                                                >  1:1314002/1‑91 (MQ=255)

                                          ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAg                                              <  1:1852097/91‑1 (MQ=255)

                                             tataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaa                                           >  1:4112054/1‑91 (MQ=255)

                                              ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa                                          <  1:226581/91‑1 (MQ=255)

                                              ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa                                          <  1:3391669/91‑1 (MQ=255)

                                                 AAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGt                                       >  1:1811609‑M1/1‑91 (MQ=255)

                                                 AAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGt                                       >  1:2436166‑M1/1‑91 (MQ=255)

                                                    gcagtaaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt                                    >  1:4034871‑M2/39‑91 (MQ=255)

                                                    GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt                                    >  1:1293524‑M1/1‑91 (MQ=255)

                                                    GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt                                    >  1:3121738‑M1/1‑91 (MQ=255)

                                                    GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGCTTCt                                    >  1:3276745‑M1/1‑91 (MQ=255)

                                                     CAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTa                                   <  1:3830914‑M1/91‑1 (MQ=255)

                                                     CAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTa                                   <  1:4106250‑M1/91‑1 (MQ=255)

                                                       gtaaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTAcc                                 >  1:535168‑M2/36‑91 (MQ=255)

                                                        taaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCa                                >  1:2195649‑M2/35‑91 (MQ=255)

                                                         aaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCAt                               >  1:2702180‑M2/34‑91 (MQ=255)

                                                         AAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCAt                               <  1:3090681‑M1/91‑1 (MQ=255)

                                                         AAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCAt                               <  1:2191663‑M1/91‑1 (MQ=255)

                                                           acctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                             >  1:620017‑M2/32‑91 (MQ=255)

                                                           acctaaagtgtcgtaagggtttactgcttttGTCTTTCGTAAAAAGCAAACCATACGCTCT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                             >  1:3312557‑M2/32‑91 (MQ=255)

                                                           ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                             <  1:1010087‑M1/91‑1 (MQ=255)

                                                           ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                             >  1:1195153‑M1/1‑91 (MQ=255)

                                                           ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                             <  1:1709734‑M1/91‑1 (MQ=255)

                                                              taaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTca                          >  1:3595532‑M2/29‑91 (MQ=255)

                                                              taaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTca                          >  1:112870‑M2/29‑91 (MQ=255)

                                                               ttACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                         <  1:1121342/91‑1 (MQ=255)

                                                                 aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                       >  1:973098/1‑91 (MQ=255)

                                                                 aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                       <  1:4040637/91‑1 (MQ=255)

                                                                     cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa                   >  1:3246387/1‑91 (MQ=255)

                                                                     cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa                   <  1:2025459/91‑1 (MQ=255)

                                                                      acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                  >  1:2598107/1‑91 (MQ=255)

                                                                       cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATg                 <  1:3455812/91‑1 (MQ=255)

                                                                       cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATg                 <  1:34188/91‑1 (MQ=255)

                                                                        tttAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGc                >  1:2649052/1‑91 (MQ=255)

                                                                           aGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtc             <  1:188534/91‑1 (MQ=255)

                                                                            ggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtct            <  1:1682464‑M2/77‑1 (MQ=255)

                                                                             gtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtctc           <  1:3326149‑M2/78‑1 (MQ=255)

                                                                               ttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa         >  1:138018‑M2/12‑91 (MQ=255)

                                                                                  ctgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt      >  1:461043‑M2/9‑91 (MQ=255)

                                                                                  ctgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt      >  1:1132201‑M2/9‑91 (MQ=255)

                                                                                  ctgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt      >  1:1132125‑M2/9‑91 (MQ=255)

                                                                                    gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc    <  1:195475‑M2/85‑1 (MQ=255)

CCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTA  >  USA300TCH1516_ALE/1456900‑1457076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.