| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1470044 | NA (NA) | 15 (0.160) | 9/150 | NT | 14.4% | intergenic (‑91/‑254) | USA300TCH1516_01369/rnhA | hypothetical protein/14.7 kDa ribonuclease H‑like protein |
| ? | USA300TCH1516_ALE | = 2866850 | 95 (0.970) | intergenic (‑249/+204) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttttc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1469955‑1470044‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT < USA300TCH1516_ALE/2866850‑2866757 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAT > 1:1354490/1‑91CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAT > 1:3984291/1‑91CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAT > 1:3418496/1‑91CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAT > 1:1829976/1‑91CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAT > 1:3418555/1‑91 CCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATT > 1:3583866/1‑91 CCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTT > 1:447647/1‑91 CCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTT < 1:539817/91‑1 CCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTT > 1:447595/1‑91 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTT < 1:1312985/91‑1 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTT < 1:3253886/91‑1 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTT < 1:1761804/91‑1 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTT > 1:1767568/1‑91 CAACTCGCATGGCCTGTAGAATTGCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTT < 1:1312469/91‑1 AACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC > 1:2819823/1‑91 TGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGCAAATAT > 1:1190281/1‑91 TGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATAT > 1:3936865/1‑91 ACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCA > 1:1585493/1‑91 ACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTC‑GTTC‑AGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTACGAAAATATCA > 1:3925062/1‑91 TAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTC‑GTTC‑AGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTACGAAAATATCATT > 1:4051846/1‑91 AGAATTGAAAAAAGCTTGTTACAAGCGTATTTTC‑ATTC‑AGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTAAAATATGATTT > 1:3365052/1‑91 GAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTC > 1:2552456/1‑91 GAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTC > 1:1438125/1‑91 TGAAAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTC > 1:2634043/1‑91 AAAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTC > 1:1722464/1‑91 AAAAAGCTTGTTACAAGCGCATTTTC‑GTTC‑AGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCA > 1:2413809/1‑91 AAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCC > 1:3820511/1‑91 AAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCC > 1:4028402/1‑91 AAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCA > 1:2434499/1‑91 AAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCAC > 1:2931756/1‑91 TTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGA < 1:2811882/91‑1 TTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGA < 1:578464/91‑1 TTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGA > 1:1385912/1‑91 TTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATATTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGA > 1:3283299/1‑91 TTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGCAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGAT > 1:3504585/1‑91 TTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGCAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGAT > 1:3504676/1‑91 TTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGAT > 1:3164654/1‑91 TTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGAT < 1:1182088/91‑1 TTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGACATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATA > 1:1742484/1‑91 TTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATA > 1:2013109/1‑91 TTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATA > 1:2013090/1‑91 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT < 1:909002/91‑1 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT > 1:3442982/1‑91 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT > 1:3442523/1‑91 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT < 1:3360759/91‑1 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT < 1:2949585/91‑1 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT > 1:2810924/1‑91 TCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT < 1:2570069/91‑1 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttttc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1469955‑1470044‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTAATTTGAGCTGGATAT < USA300TCH1516_ALE/2866850‑2866757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |