BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1470044	NA (NA)	15 (0.160)	9/150	NT	14.4%	intergenic (‑91/‑254)	USA300TCH1516_01369/rnhA	hypothetical protein/14.7 kDa ribonuclease H‑like protein
*	?	USA300TCH1516_ALE	= 2866850	95 (0.970)	15 (0.160)	9/150	NT	14.4%	intergenic (‑249/+204)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein

Only 100 of 148 total aligned reads displayed.

TCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATC  >  USA300TCH1516_ALE/2866760‑2866940

tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAA                                                                                            >  1:1385912‑M2/1‑91 (MQ=255)

tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAA                                                                                            <  1:2811882‑M2/91‑1 (MQ=255)

tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAA                                                                                            <  1:578464‑M2/91‑1 (MQ=255)

    gCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                        <  1:1859537/91‑1 (MQ=255)

    gCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                        <  1:1001108/91‑1 (MQ=255)

      tCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCtt                                                                                      >  1:2757701/1‑91 (MQ=255)

      tCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCtt                                                                                      >  1:2757808/1‑91 (MQ=255)

          aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCATGGTTGACTAGAATTGAAAAAAGCTTGTTa                                                                                  >  1:3330371/1‑91 (MQ=255)

          aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAACAGCTTGTTa                                                                                  >  1:3971532/1‑91 (MQ=255)

          aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTa                                                                                  >  1:3258936/1‑91 (MQ=38)

           ttAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTAc                                                                                 >  1:695059/1‑91 (MQ=39)

            tAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACa                                                                                <  1:153692/91‑1 (MQ=39)

             aGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACaa                                                                               >  1:255420/1‑91 (MQ=37)

              gggAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                                              <  1:1291534/91‑1 (MQ=39)

               ggAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgc                                                                             >  1:2349559/1‑91 (MQ=39)

               ggAGTGGGACAGAAATGATAGTTTCGCAAAATTGATCTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgc                                                                             <  1:237868/91‑1 (MQ=255)

                gAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                                            <  1:757607/91‑1 (MQ=39)

                 aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                           <  1:4119925/91‑1 (MQ=40)

                 aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                           <  1:2414440/91‑1 (MQ=40)

                 aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                           <  1:2414575/91‑1 (MQ=40)

                  gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAtgcgcttgtaacaagctt                                                                          >  1:2931756‑M2/1‑73 (MQ=255)

                  gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCa                                                                          <  1:1136909/91‑1 (MQ=255)

                   tGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                                                                         <  1:2659483/91‑1 (MQ=255)

                   tGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                                                                         <  1:1013166/91‑1 (MQ=255)

                   tGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                                                                         >  1:3549542/1‑91 (MQ=255)

                    gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAtgcgcttgtaacaagctttt                                                                        >  1:3820511‑M2/1‑71 (MQ=255)

                      gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAtgcgcttgtaacaagctttttt                                                                      >  1:1722464‑M2/1‑69 (MQ=255)

                      gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                                                                      <  1:3573952/91‑1 (MQ=255)

                        cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                                                    >  1:1742066/1‑91 (MQ=255)

                        cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                                                    <  1:3950228/91‑1 (MQ=255)

                         aGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGATTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                   <  1:3498787/91‑1 (MQ=255)

                         aGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                   >  1:1849829/1‑91 (MQ=255)

                           aaaTCATATTTTAGCAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACT‑GAAT‑GAAAAtacgcttgtaacaagcttttttcaattct                                                               >  1:3365052‑M2/1‑62 (MQ=255)

                            aaTGATATTTTCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACT‑GAAC‑GAAAAttcgcttgtaacaagcttttttcaattcta                                                              >  1:4051846‑M2/1‑61 (MQ=255)

                            aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCa                                                                >  1:2182618/1‑91 (MQ=255)

                            aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCa                                                                >  1:2182655/1‑91 (MQ=255)

                              tGATATTTTCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACT‑GAAC‑GAAAAttcgcttgtaacaagcttttttcaattctagt                                                            >  1:3925062‑M2/1‑59 (MQ=255)

                              tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGt                                                              <  1:4013515/91‑1 (MQ=255)

                              tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACT‑GAAC‑GAAAAtgcgcttgtaacaagcttttttcaattctagt                                                            >  1:1585493‑M2/1‑59 (MQ=255)

                                atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                            >  1:3436293/1‑91 (MQ=255)

                                atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACT‑GAAC‑GAAAAtgcgcttgtaacaagcttttttcaattctagtca                                                          >  1:3936865‑M2/1‑57 (MQ=255)

                                atatTTGCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACT‑GAAC‑GAAAAtgcgcttgtaacaagcttttttcaattctagtca                                                          >  1:1190281‑M2/1‑57 (MQ=255)

                                  atTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac                                                          <  1:687533/91‑1 (MQ=255)

                                   ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                                                         <  1:1630013/91‑1 (MQ=255)

                                   ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                                                         <  1:649859/91‑1 (MQ=255)

                                    tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                                                        >  1:2513465/1‑91 (MQ=255)

                                    tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                                                        >  1:1329677/1‑91 (MQ=255)

                                    tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                                                        >  1:1273683/1‑91 (MQ=255)

                                     ttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                       <  1:1354936/91‑1 (MQ=255)

                                       cGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                     <  1:3652416/91‑1 (MQ=255)

                                       cGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                     >  1:1509353/1‑91 (MQ=255)

                                            aaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                <  1:3527265/91‑1 (MQ=255)

                                            aaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                <  1:3527098/91‑1 (MQ=40)

                                             atttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata                                               <  1:1470118/91‑1 (MQ=255)

                                              tttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                                              <  1:323270/91‑1 (MQ=255)

                                               ttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata                                             <  1:63182/91‑1 (MQ=255)

                                               ttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata                                             <  1:1297147/91‑1 (MQ=255)

                                                 atttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc                                           >  1:261830/1‑91 (MQ=255)

                                                 atttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc                                           >  1:16820/1‑91 (MQ=255)

                                                 atttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc                                           <  1:185382/91‑1 (MQ=255)

                                                 atttAGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATAGAAc                                           >  1:3273799/1‑91 (MQ=255)

                                                      gtcgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGt                                      >  1:2800326/1‑91 (MQ=255)

                                                        cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag                                    <  1:367769/91‑1 (MQ=255)

                                                          tcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag                                  >  1:2901504/1‑91 (MQ=255)

                                                           cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGc                                 <  1:2619356/91‑1 (MQ=255)

                                                           cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGc                                 <  1:3129243/91‑1 (MQ=255)

                                                            ccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa                                >  1:535867/1‑91 (MQ=255)

                                                              aCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa                              >  1:214885/1‑91 (MQ=255)

                                                               ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg                             >  1:54146/1‑91 (MQ=255)

                                                               ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTGCGTAGAGCATAg                             <  1:3199656/91‑1 (MQ=255)

                                                                cccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa                            >  1:647591/1‑91 (MQ=255)

                                                                cccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa                            >  1:650756/1‑91 (MQ=255)

                                                                cccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa                            <  1:1644230/91‑1 (MQ=255)

                                                                 ccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGaa                           >  1:2742849/1‑91 (MQ=255)

                                                                  cAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAAc                          <  1:491116/91‑1 (MQ=40)

                                                                   ggCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa                         <  1:2497554/90‑1 (MQ=38)

                                                                   aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTCCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa                         <  1:1863724/91‑1 (MQ=255)

                                                                      aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTg                      >  1:1606442/1‑91 (MQ=35)

                                                                         gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt                   >  1:2923777/1‑91 (MQ=32)

                                                                                aGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAGTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTAc            <  1:3994253/91‑1 (MQ=17)

                                                                                   aTTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg         <  1:2117933/91‑1 (MQ=34)

                                                                                   aTTGAAAAAAGCTTGATACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg         >  1:1022436/1‑91 (MQ=21)

                                                                                     tGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc       <  1:87648/91‑1 (MQ=34)

                                                                                      gAAAAtgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagtt      >  1:2819823‑M2/1‑5 (MQ=255)

                                                                                       aaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttg     <  1:1312985‑M2/91‑88 (MQ=255)

                                                                                       aaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttg     >  1:1767568‑M2/1‑4 (MQ=255)

                                                                                       aaaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTg     >  1:2107565/1‑91 (MQ=34)

                                                                                       aaaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTg     <  1:3116566/91‑1 (MQ=34)

                                                                                        aaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgg    >  1:447595‑M2/1‑3 (MQ=255)

                                                                                        aaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgg    >  1:447647‑M2/1‑3 (MQ=255)

                                                                                        aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa    >  1:3558106/1‑91 (MQ=34)

                                                                                        aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa    <  1:2567115/91‑1 (MQ=34)

                                                                                        aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa    <  1:2787330/91‑1 (MQ=34)

                                                                                        aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa    <  1:3375613/91‑1 (MQ=34)

                                                                                         aatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttggg   >  1:3583866‑M2/1‑2 (MQ=255)

                                                                                          atgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgggg  >  1:1829976‑M2/1‑1 (MQ=255)

                                                                                          atgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgggg  >  1:3418496‑M2/1‑1 (MQ=255)

                                                                                          atgcgcttgtaacaagcttttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgggg  >  1:1354490‑M2/1‑1 (MQ=255)

                                                                                          aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATc  >  1:1406749/1‑91 (MQ=34)

                                                                                          aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATc  <  1:1245791/91‑1 (MQ=34)

TCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATC  >  USA300TCH1516_ALE/2866760‑2866940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.