| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1601462 = | NA (NA) | 8 (0.090) | 7/146 | NT | 100% | coding (131/177 nt) | USA300TCH1516_01480 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1601492 = | 0 (0.000) | coding (101/177 nt) | USA300TCH1516_01480 | hypothetical protein | |||||
AGATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGAtaactgt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1601551‑1601462‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC > USA300TCH1516_ALE/1601492‑1601586 AGATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGAT < 1:1074023/91‑1 GATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATA < 1:2961458/91‑1 GATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATA < 1:2609099/91‑1 ATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAA > 1:730103/1‑91 ATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAA > 1:3993449/1‑91 TATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAAC < 1:649449/91‑1 ATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACT < 1:666744/91‑1 ATACCAAGAGACGAATGGAATCGACTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACT > 1:1835672/1‑91 TACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTG > 1:2128408/1‑91 TACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTG > 1:2699776/1‑91 TACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTG < 1:3628181/91‑1 TACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTG > 1:2135067/1‑91 TACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTG > 1:876916/1‑91 TAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCC > 1:1490455/1‑91 TAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGT > 1:290635/1‑91 AATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTC > 1:1527744/1‑91 TCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTC > 1:3810080/1‑91 CAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCT > 1:3011391/1‑91 AGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTAT > 1:3095659/1‑91 AGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTAT > 1:3096105/1‑91 TTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGATAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATAT > 1:3102191/1‑91 ggtgACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAAGCATCTTTAATTT < 1:3205842/87‑1 AACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTC < 1:3675457/91‑1 ACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCT < 1:253866/91‑1 ACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCT < 1:1372310/91‑1 CTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTT < 1:3525360/91‑1 CTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTT < 1:2631380/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:3519291/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:1983545/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:4024848/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:4030865/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:1935184/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:1443815/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC > 1:1144797/1‑91 TGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGGATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:3597167/91‑1 TGTATTGATTATTTACTTCATTTACTAATCGAGTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC < 1:3519174/91‑1 AGATATACCAAGAGACGAATGGAATCGATTAGTAAATGAAGTAAATAATCAATACAGTTACCAAGCTGACAAGGTAGGACTTGCCAG‑‑TGAtaactgt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1601551‑1601462‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTC > USA300TCH1516_ALE/1601492‑1601586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |