| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1732970 | 94 (0.960) | 12 (0.140) | 7/136 | NT | 11.9% | intergenic (+156/+81) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1733003 | 97 (1.160) | intergenic (+189/+48) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732870‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < USA300TCH1516_ALE/1733003‑1732914 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG > 1:301214/1‑91GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:3817561/91‑1GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:2091270/91‑1GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG > 1:571104/1‑91 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA < 1:3217364/91‑1 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA < 1:3217466/91‑1 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA < 1:81899/91‑1 AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAA < 1:2034762/91‑1 AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAA < 1:3708215/91‑1 AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAA > 1:2004719/1‑91 ACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAA > 1:873681/1‑91 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1802592/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG > 1:1059625/1‑91 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1851822/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1850062/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1851260/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 1:101610/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 1:4040381/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 1:4040557/91‑1 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAACTATGAAAGCGCC > 1:4104450/1‑91 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC > 1:2290741/1‑91 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC > 1:2357739/1‑91 TTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCC < 1:1420163/91‑1 TTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCC > 1:71365/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 1:1809948/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 1:1937601/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC < 1:1167536/91‑1 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT < 1:1046205/91‑1 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT < 1:2954230/91‑1 CATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTT < 1:2617313/91‑1 CATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTT < 1:2617328/91‑1 TTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGA < 1:3639026/91‑1 TTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGA < 1:972351/91‑1 TTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGA < 1:2018711/91‑1 ATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG < 1:3139688/91‑1 ATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG < 1:1990287/91‑1 TTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGG < 1:1244859/91‑1 GTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT < 1:4136463/91‑1 TCTAAAGCAAATATGAAAGCGCCCCATCAAATAAACCCTTGCACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAG < 1:685517/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 1:1240347/91‑1 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATT > 1:2650591/1‑91 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATT > 1:3126291/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 1:2594009/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 1:1892612/1‑91 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 1:3432187/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 1:3781533/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGGGCTTTCATGTTTTCATTAGAATTTTAAGTGAATTTGAATCATTACT < 1:3305583/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 1:3445272/91‑1 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA < 1:1011237/91‑1 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA > 1:1730356/1‑91 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 1:374017/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 1:223475/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 1:2814698/91‑1 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT > 1:179942/1‑91 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT > 1:2438465/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 1:1803124/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 1:1721052/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 1:366638/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 1:1100665/1‑91 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732870‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < USA300TCH1516_ALE/1733003‑1732914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |