| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1735361 | 86 (0.870) | 4 (0.050) | 4/134 | NT | 5.1% | intergenic (+61/+100) | USA300TCH1516_01624/tcdA | putative AAA domain‑containing protein/tRNA threonylcarbamoyladenosine dehydratase |
| ? | USA300TCH1516_ALE | = 1735390 | 78 (0.950) | intergenic (+90/+71) | USA300TCH1516_01624/tcdA | putative AAA domain‑containing protein/tRNA threonylcarbamoyladenosine dehydratase | |||||
CTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1735259‑1735361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactgactagtTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTTATTT < USA300TCH1516_ALE/1735390‑1735301 CTCAAAGAAATATATAACAACTTACTTAATCAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCA < 1:3330207/91‑1 TCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAA > 1:37719/1‑91 TCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAA > 1:3157677/1‑91 CAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAA < 1:136524/91‑1 AAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAA > 1:853383/1‑91 AAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAA < 1:1558814/91‑1 AAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAAC < 1:1630513/91‑1 GAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTG < 1:58367/91‑1 AAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGA < 1:2275742/91‑1 AAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGA < 1:2710618/91‑1 TATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTA > 1:1008106/1‑91 TATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTA > 1:3465293/1‑91 TATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTA > 1:2295685/1‑91 TATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGTTATTTTAGCTATAATCAAATCAAAACTGACTAGT > 1:659326/1‑91 TATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGT < 1:1036334/91‑1 TAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGT < 1:566594/91‑1 AATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTAC < 1:1777158/91‑1 TAAGATTAAATCGATTACCTTTGATATTTTAGCGATAATCAAATCAAAACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTA < 1:3398849/91‑1 GATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTC < 1:3359419/91‑1 AAAACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGAT > 1:3368129/1‑91 AAAACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGAT > 1:3559781/1‑91 AACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTT < 1:1309198/91‑1 AACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTT < 1:3160977/91‑1 AACTGACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTT > 1:2210395/1‑91 CTGACTAGTTCGCAAGCATAGTAGAATATGCGTCGTGTACTAGTCAGTTTTGAGTTGGTTATAGCTAAAATATCAAAGGTAATCGATTTAA < 1:3313461/91‑1 GACTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATC > 1:1935780/1‑91 CTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGCTTTAATCTT > 1:3973261/1‑91 CTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTT > 1:2594833/1‑91 CTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTT > 1:1512433/1‑91 CTAGTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTT > 1:1513244/1‑91 GTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTTATT > 1:3174102/1‑91 GTTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTTATT > 1:2860033/1‑91 TTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTTATTT < 1:978021/91‑1 CTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAAAAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1735259‑1735361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactgactagtTCGCAAGCATAGTAGAATATGCCTCGTGTACTAGTCAGTTTTGATTTGATTATAGCTAAAATATCAAAGGTAATCGATTTAATCTTATTT < USA300TCH1516_ALE/1735390‑1735301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |