BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1735361	86 (0.870)	4 (0.050)	4/134	NT	5.1%	intergenic (+61/+100)	USA300TCH1516_01624/tcdA	putative AAA domain‑containing protein/tRNA threonylcarbamoyladenosine dehydratase
*	?	USA300TCH1516_ALE	= 1735390	78 (0.950)	4 (0.050)	4/134	NT	5.1%	intergenic (+90/+71)	USA300TCH1516_01624/tcdA	putative AAA domain‑containing protein/tRNA threonylcarbamoyladenosine dehydratase

Only 100 of 106 total aligned reads displayed.

AAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCTTTAA  >  USA300TCH1516_ALE/1735301‑1735480

 aaTAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAac                                                                                          >  1:2860033‑M2/1‑89 (MQ=255)

 aaTAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAac                                                                                          >  1:3174102‑M2/1‑89 (MQ=255)

    aaGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactag                                                                                       >  1:2594833‑M2/1‑86 (MQ=255)

    aaGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactag                                                                                       >  1:1512433‑M2/1‑86 (MQ=255)

    aaGATTAAAGCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactag                                                                                       >  1:3973261‑M2/1‑86 (MQ=255)

      gATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactagtc                                                                                     >  1:1935780‑M2/1‑84 (MQ=255)

        ttAAATCGATTACCTTTGATATTTTAGCTATAACCAACTCAAAACTGACTAGTACACGACGCATATTCTACTATGCTTGCGAactagtcag                                                                                   <  1:3313461‑M2/91‑10 (MQ=255)

          aaaTCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactagtcagtt                                                                                 <  1:1309198‑M2/91‑12 (MQ=255)

          aaaTCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactagtcagtt                                                                                 >  1:2210395‑M2/1‑80 (MQ=255)

          aaaTCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactagtcagtt                                                                                 <  1:3160977‑M2/91‑12 (MQ=255)

            aTCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAactagtcagtttt                                                                               >  1:3559781‑M2/1‑78 (MQ=255)

                aTTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCagttttagtt                                                                           <  1:4118809/91‑1 (MQ=255)

                 ttACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCagttttagttt                                                                          >  1:3978942/1‑91 (MQ=255)

                  tACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCagttttagtttt                                                                         <  1:3721741/91‑1 (MQ=255)

                  tACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCagttttagtttt                                                                         >  1:2529662/1‑91 (MQ=255)

                  tACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCagttttagtttt                                                                         >  1:3348145/1‑91 (MQ=255)

                  tACCTTTGATATTTTAGCTATAATCAAATCAAAACCGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCagttttagtttt                                                                         >  1:20423/1‑91 (MQ=255)

                   aCCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAgttttagtttta                                                                        <  1:3311369/91‑1 (MQ=255)

                    ccTTTGATATTTTAGCTATAATCAAATCATAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTAt                                                                       <  1:2642835/91‑1 (MQ=255)

                    ccTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTAt                                                                       >  1:4039963/1‑91 (MQ=255)

                    ccTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTAt                                                                       >  1:4039978/1‑91 (MQ=255)

                     cTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATg                                                                      <  1:819480/91‑1 (MQ=255)

                     cTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATg                                                                      >  1:2919465/1‑91 (MQ=255)

                     cTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATg                                                                      <  1:496616/91‑1 (MQ=255)

                     cTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATg                                                                      <  1:496495/91‑1 (MQ=255)

                      tttGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATgg                                                                     >  1:3063998/1‑91 (MQ=255)

                          atatTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGtgtg                                                                 <  1:2154606/91‑1 (MQ=255)

                          atatTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGtgtg                                                                 <  1:1323964/91‑1 (MQ=255)

                          atatTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGtgtg                                                                 <  1:908607/91‑1 (MQ=255)

                            atTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGt                                                               <  1:1702387/91‑1 (MQ=255)

                             ttttAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGtt                                                              >  1:2880670/1‑91 (MQ=255)

                             ttttAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGtt                                                              <  1:1394035/91‑1 (MQ=255)

                              tttAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTa                                                             <  1:2975154/91‑1 (MQ=255)

                               ttAGCTATAATCAAATCAAAACTGACTAGTACATGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTac                                                            >  1:3375099/1‑91 (MQ=255)

                               ttAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTac                                                            >  1:3015622/1‑91 (MQ=255)

                               ttAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTac                                                            >  1:2880957/1‑91 (MQ=255)

                               ttAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTac                                                            <  1:3654831/91‑1 (MQ=255)

                                tAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTaca                                                           >  1:2198280/1‑91 (MQ=255)

                                 aGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTacac                                                          <  1:4080709/91‑1 (MQ=255)

                                   cTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACtt                                                        <  1:1994294/91‑1 (MQ=255)

                                   cTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACtt                                                        <  1:1783764/91‑1 (MQ=255)

                                     ataATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGc                                                      >  1:1421602/1‑91 (MQ=255)

                                     ataATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGc                                                      >  1:1622070/1‑91 (MQ=255)

                                          caaatcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTAc                                                 >  1:1715603/1‑91 (MQ=255)

                                             atcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGtt                                              >  1:559782/1‑91 (MQ=255)

                                             atcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGtt                                              <  1:418057/91‑1 (MQ=255)

                                             atcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGtt                                              <  1:418930/91‑1 (MQ=255)

                                              tcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTg                                             <  1:106818/91‑1 (MQ=255)

                                              tcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTg                                             <  1:3887187/91‑1 (MQ=255)

                                              tcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTg                                             <  1:3954468/91‑1 (MQ=255)

                                              tcaaaACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTg                                             <  1:4094697/91‑1 (MQ=255)

                                                aaaaCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaa                                           >  1:1040689/1‑91 (MQ=255)

                                                aaaaCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaa                                           <  1:1217240/91‑1 (MQ=255)

                                                aaaaCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaa                                           <  1:1217300/91‑1 (MQ=255)

                                                 aaaCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaaa                                          >  1:2181793/1‑91 (MQ=255)

                                                 aaaCTGAATAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaaa                                          <  1:2068509/91‑1 (MQ=255)

                                                  aaCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaaaa                                         >  1:2893844/1‑91 (MQ=255)

                                                  aaCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGaaaa                                         >  1:1438619/1‑91 (MQ=255)

                                                   aCTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAAt                                        <  1:2318900/91‑1 (MQ=255)

                                                    cTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAAtt                                       >  1:2735251/1‑91 (MQ=255)

                                                    cTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAAtt                                       >  1:1464748/1‑91 (MQ=255)

                                                     tGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTa                                      >  1:3163675/1‑91 (MQ=255)

                                                      gACTAGTACACGAGGCATATTCTACTATGCTTGCGAactagtcagttttgatttgattatagctaaaatatcaaaggtaatcgatttaatc                                     <  1:3359419‑M2/91‑56 (MQ=255)

                                                       aCTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATc                                    >  1:1533011/1‑91 (MQ=255)

                                                        cTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATcc                                   >  1:3705166/1‑91 (MQ=255)

                                                        cTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATcc                                   <  1:3714890/91‑1 (MQ=255)

                                                         tAGTACACGAGGCATATTCTACTATGCTTGCGAactagtcagttttgatttgattatcgctaaaatatcaaaggtaatcgatttaatctta                                  <  1:3398849‑M2/91‑59 (MQ=255)

                                                         tAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATccc                                  >  1:2997934/1‑91 (MQ=255)

                                                          aGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCt                                 >  1:2516106/1‑91 (MQ=255)

                                                           gTACACGAGGCATATTCTACTATGCTTGCGAactagtcagttttgatttgattatagctaaaatatcaaaggtaatcgatttaatcttatt                                <  1:1777158‑M2/91‑61 (MQ=255)

                                                             acacGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTc                              >  1:951407/1‑91 (MQ=255)

                                                             acacGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTc                              >  1:1218334/1‑91 (MQ=255)

                                                             acacGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTc                              >  1:1218457/1‑91 (MQ=255)

                                                             acacGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTc                              <  1:2637710/91‑1 (MQ=255)

                                                             acacGAGGCATATTCTACTATGCTTGAGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACTCTTGCCTTACGTTGAAAATTATCCCTTTc                              <  1:2637741/91‑1 (MQ=255)

                                                               acGAGGCATATTCTACTATGCTTGCGAactagtcagttttgatttgattatagctaaaatatcaaaggtaatcgatttaatcttattttta                            <  1:566594‑M2/91‑65 (MQ=255)

                                                                cGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCaaa                           >  1:2852344/1‑91 (MQ=255)

                                                                 gAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCaaaa                          <  1:2208826/91‑1 (MQ=255)

                                                                  aGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAAt                         >  1:465623/1‑91 (MQ=255)

                                                                   ggCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATg                        <  1:2271113/91‑1 (MQ=255)

                                                                   ggCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATg                        <  1:245427/91‑1 (MQ=255)

                                                                       tatTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAatt                    >  1:2724966/1‑91 (MQ=255)

                                                                       tatTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAatt                    >  1:2534234/1‑91 (MQ=255)

                                                                        atTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAatta                   <  1:3473087/91‑1 (MQ=255)

                                                                        atTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAatta                   <  1:2728862/91‑1 (MQ=255)

                                                                         ttCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAattat                  <  1:452175/91‑1 (MQ=255)

                                                                           ctactaTGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTACCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTg                >  1:1755929/1‑91 (MQ=255)

                                                                              ctaTGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGccc             <  1:3963756/91‑1 (MQ=255)

                                                                               taTGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCt            <  1:2484202/91‑1 (MQ=255)

                                                                                 tGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCttt          <  1:3486133/91‑1 (MQ=255)

                                                                                  gctcgCGAACTAGCCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTg         <  1:1316923/87‑1 (MQ=255)

                                                                                  gctcgCGAACTAGCCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTg         <  1:1316508/87‑1 (MQ=255)

                                                                                   cTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGt        <  1:2525647/91‑1 (MQ=255)

                                                                                   cTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAAATATCCCTTTCAAAATGAATTATTGCCCTTTGt        <  1:1622059/91‑1 (MQ=255)

                                                                                     tGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAATTTATCCCTTTCAAAATGAATTATTGCCCTTTGTCt      <  1:1312208/91‑1 (MQ=255)

                                                                                     tGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCt      <  1:771522/91‑1 (MQ=255)

                                                                                      gCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCtt     <  1:479293/91‑1 (MQ=255)

                                                                                       cGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCttt    >  1:273070/1‑91 (MQ=255)

                                                                                       cGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCttt    >  1:1127325/1‑91 (MQ=255)

                                                                                         aaCTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCTTTaa  >  1:3845825/1‑91 (MQ=255)

AAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACTATGCTTGCGAACTAGTCAGTTTTAGTTTTATGGTGTGGTTACACTTGCCTTACGTTGAAAATTATCCCTTTCAAAATGAATTATTGCCCTTTGTCTTTAA  >  USA300TCH1516_ALE/1735301‑1735480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.