| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2008942 = | 91 (0.930) | 14 (0.170) | 7/132 | NT | 17.4% | intergenic (+70/+121) | USA300HOU_RS10115/USA300HOU_RS10125 | hypothetical protein/Putative multidrug export ATP‑binding/permease protein |
| ? | USA300TCH1516_ALE | 2008991 = | 58 (0.710) | intergenic (+119/+72) | USA300HOU_RS10115/USA300HOU_RS10125 | hypothetical protein/Putative multidrug export ATP‑binding/permease protein | |||||
TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2009045‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC > USA300TCH1516_ALE/2008991‑2009079 TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 1:3126127/1‑91TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 1:327840/1‑91 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC < 1:2643357/91‑1 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC < 1:64258/91‑1 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT < 1:1133080/91‑1 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT < 1:883000/91‑1 AGTACAATTTTGTAGGGAAGATTTGTAACAGGATGGTGAGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTCATTGAAAATAATCTT > 1:551637/1‑91 AGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTT > 1:2429623/1‑91 TACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTAC < 1:337377/91‑1 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT > 1:3781062/1‑91 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT > 1:3780286/1‑91 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT < 1:869330/91‑1 CAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG < 1:3489337/91‑1 CAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG > 1:2292192/1‑91 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT > 1:1622465/1‑91 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT < 1:3960580/91‑1 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT < 1:3960527/91‑1 TGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT < 1:943472/91‑1 GTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCC > 1:1566984/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:1808733/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:1066874/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:2136591/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:2506758/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:3074217/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:2800141/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:3074147/1‑91 GTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTA > 1:2490350/1‑91 TAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAC > 1:2835944/1‑91 AGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATCACCCCACCATCCTGTTACAAATTTTCTCTGCAAGATTGTACTG > 1:4146897/1‑91 AGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATCACCCCACCATCCTGTTACAAATTTTCTCTACAAGATTGTACTG > 1:4146896/1‑91 ATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGT > 1:226777/1‑91 TTTTCTTAATTGAAAAT‑CTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCA > 1:2670706/1‑91 AATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACT > 1:244598/1‑91 CTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAA > 1:2832601/1‑91 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG < 1:1629271/91‑1 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGT < 1:2544150/91‑1 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGT > 1:1271201/1‑91 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 1:4008978/91‑1 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 1:4085791/91‑1 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 1:3002400/91‑1 TGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTT < 1:596725/91‑1 GCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTG > 1:1358700/1‑91 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAAT < 1:1563314/91‑1 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAAT < 1:404227/91‑1 TTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC > 1:1231007/1‑91 TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2009045‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC > USA300TCH1516_ALE/2008991‑2009079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |