| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2143370 = | 77 (0.780) | 13 (0.160) | 7/132 | NT | 16.9% | intergenic (+5/+20) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2143414 = | 64 (0.790) | coding (1230/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2143473‑2143370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTA > USA300TCH1516_ALE/2143414‑2143501 ATGATGGTGGTATTTTCAATCATGCTATTCTGATTTGTAAAGCGCAATAAAAACAAAGATAAAAACGAATCACAGCGACGATAATCCGTGT < 1:3309176/91‑1 GATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGT < 1:4088449/91‑1 GATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGT < 1:4088395/91‑1 ATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTG < 1:3652171/91‑1 TGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGA > 1:1384726/1‑91 TGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGA > 1:3448040/1‑91 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT > 1:584631/1‑91 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT > 1:1400834/1‑91 TGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTC < 1:3822943/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2808844/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG > 1:1767904/1‑91 GTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGT > 1:1438472/1‑91 TATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT > 1:223309/1‑91 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT < 1:1545217/91‑1 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT > 1:1625227/1‑91 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT < 1:3751021/91‑1 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT > 1:2276404/1‑91 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT > 1:2276661/1‑91 ATTTTCAATCATGCTATTCTTAAGTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT < 1:1545117/91‑1 TTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTT < 1:2279234/91‑1 TTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTT < 1:3631173/91‑1 TTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTT > 1:875695/1‑91 AAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAT > 1:1554781/1‑91 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACC > 1:2898737/1‑91 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACC > 1:1455767/1‑91 AATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTCTTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCAC > 1:3505374/1‑91 AATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACTAC > 1:1343471/1‑91 AATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCAC > 1:3194227/1‑91 AATCACAGCGACCATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCAC > 1:3194639/1‑91 ACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATC > 1:2831491/1‑91 ACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATC > 1:3845122/1‑91 AGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > 1:93452/1‑91 CGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAG > 1:1208770/1‑91 AATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAC > 1:650927/1‑91 AATCCGTGTGTGATTCGTTTTGATCTTTCTTATTATTTCGCTTTACAACTAAGAATTGCATGATTGAAAATACCACCATCATAGAACATcc > 1:650579/1‑89 GTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAG > 1:780552/1‑91 GTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAG > 1:780179/1‑91 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:2500953/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC > 1:878508/1‑91 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC > 1:550572/1‑91 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:455207/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:455192/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC > 1:2156425/1‑91 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:2499332/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:2499356/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:2501252/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 1:1720131/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 1:2605109/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 1:4101312/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 1:3900452/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA > 1:501166/1‑91 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA > 1:1403576/1‑91 TCGTTTTTATTTTTCTTTTTATTTCACTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAAC < 1:3866674/91‑1 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT < 1:3839559/91‑1 TTTTTATTTCTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT < 1:3974566/91‑1 TTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTT < 1:1747802/91‑1 TTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTA > 1:1579610/1‑91 ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2143473‑2143370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTA > USA300TCH1516_ALE/2143414‑2143501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |