| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2252589 = | 109 (1.110) | 19 (0.220) | 13/142 | NT | 17.6% | intergenic (+25/+127) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2252638 = | 81 (0.930) | intergenic (+74/+78) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein | |||||
AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2252687‑2252589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > USA300TCH1516_ALE/2252638‑2252727 AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGA > 1:2895420/1‑91 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 1:3808185/91‑1 AGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAAT‑AAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:1608441/91‑1 AGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAAT‑AAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:1608404/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTTGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:1128411/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:876682/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:276529/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:1247654/91‑1 ATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC > 1:3646103/1‑91 TTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTT < 1:2902353/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 1:102020/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 1:3991298/91‑1 ATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAA > 1:3669476/1‑91 ATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAA > 1:3668561/1‑91 AAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGT > 1:1449740/1‑91 AAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTA > 1:483617/1‑91 AAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAATAAGTAAA > 1:2077055/1‑91 AGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAA > 1:3270810/1‑91 AGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAA > 1:3046614/1‑91 AGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAA > 1:2394171/1‑91 GCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAAT > 1:4044579/1‑91 CAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATC > 1:829415/1‑91 GTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTT > 1:3466918/1‑91 GGACAATGGTGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAA > 1:1944870/1‑91 GGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAA > 1:1435476/1‑91 GGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAA > 1:1435282/1‑91 GACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAAC > 1:200122/1‑91 GACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAAC > 1:3796401/1‑91 CAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACAT > 1:690731/1‑91 AATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATT > 1:2412681/1‑91 ATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTT > 1:406267/1‑91 ACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTAT < 1:1745637/91‑1 TGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA < 1:3157420/91‑1 TGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA > 1:405397/1‑91 TGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA > 1:405469/1‑91 TTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTT < 1:1201481/91‑1 TTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTT > 1:3125724/1‑91 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT < 1:671458/91‑1 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > 1:1238932/1‑91 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT < 1:1554723/91‑1 AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2252687‑2252589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > USA300TCH1516_ALE/2252638‑2252727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |