| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2357381 = | 63 (0.640) | 8 (0.090) | 6/140 | NT | 11.0% | intergenic (‑331/+207) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | 2357417 = | 74 (0.860) | intergenic (‑367/+171) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2357479‑2357381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT > USA300TCH1516_ALE/2357417‑2357506 AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTA > 1:332874/1‑91AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTA > 1:1283487/1‑91 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA < 1:909836/91‑1 GATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAGATATCGGACTTATGAACAGAAATGTTTTTAAG > 1:4102705/1‑91 GATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAG < 1:2506250/91‑1 ATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGT > 1:1848887/1‑91 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC > 1:3812613/1‑91 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC > 1:3813177/1‑91 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC > 1:3942061/1‑91 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC < 1:3841620/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 1:1186206/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 1:3789180/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 1:1186193/91‑1 AAAGCGTGATCTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGA > 1:2086757/1‑91 AAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGA > 1:2086921/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:497669/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:2673535/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:2851918/1‑91 ATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGC > 1:935204/1‑91 ATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGC > 1:938729/1‑91 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGCTCACGCTTT > 1:1259741/1‑91 GGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAA > 1:973078/1‑91 GGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAA > 1:2671129/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 1:2883593/1‑91 CTTATGAACAGAAATCTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCAATCATAAGTTTGTTAAGTTCACGCTTTAAATC > 1:3544652/1‑91 ACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCGTCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTT > 1:365635/1‑91 TAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTA > 1:2901660/1‑91 TAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTA < 1:703164/91‑1 AAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAC < 1:2183008/91‑1 AGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGCTGGGGTACT > 1:3966032/1‑91 AGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACT > 1:1219653/1‑91 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:2670595/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:1879007/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:269441/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:1877431/91‑1 CCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATACGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTG > 1:3613079/1‑91 CCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTG > 1:1378574/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:371135/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC < 1:3608762/91‑1 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC < 1:3415489/91‑1 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:1901712/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:1901623/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:1901283/1‑91 TATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGACGGGGTACTCTGAGCT < 1:1241153/91‑1 AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2357479‑2357381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT > USA300TCH1516_ALE/2357417‑2357506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |