BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2357381 =	63 (0.640)	8 (0.090)	6/140	NT	11.0%	intergenic (‑331/+207)	ecfA1/rplQ	Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17
*	?	USA300TCH1516_ALE	2357417 =	74 (0.860)	8 (0.090)	6/140	NT	11.0%	intergenic (‑367/+171)	ecfA1/rplQ	Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17

Only 100 of 129 total aligned reads displayed.

AACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT  >  USA300TCH1516_ALE/2357328‑2357506

gcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGTCCGatat                                                                                          >  1:938729‑M1/54‑91 (MQ=255)

   tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt                                                                                       <  1:1739650/91‑1 (MQ=255)

   tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt                                                                                       <  1:1739717/91‑1 (MQ=255)

     gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGCAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                     >  1:3288685/1‑91 (MQ=255)

     gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                     <  1:284018/91‑1 (MQ=255)

     gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                     >  1:3083191/1‑91 (MQ=255)

     gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                     <  1:284097/91‑1 (MQ=255)

      cTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAtt                                                                                    >  1:802961/1‑91 (MQ=255)

       ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc                                                                                   <  1:373366/91‑1 (MQ=255)

       ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc                                                                                   >  1:1402620/1‑91 (MQ=255)

         catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa                                                                                 <  1:507357/91‑1 (MQ=255)

         catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa                                                                                 <  1:2126469/91‑1 (MQ=255)

           tcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATa                                                                               >  1:741603/1‑91 (MQ=255)

            catATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaa                                                                              <  1:3645788/91‑1 (MQ=255)

            catATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaa                                                                              <  1:4110293/91‑1 (MQ=255)

               atTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaa                                                                           <  1:2700265/91‑1 (MQ=255)

                tttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaaa                                                                          <  1:1450010/91‑1 (MQ=255)

                tttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaaa                                                                          >  1:2647141/1‑91 (MQ=255)

                tttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaaa                                                                          <  1:2136093/91‑1 (MQ=255)

                 ttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAg                                                                         <  1:3797281/91‑1 (MQ=255)

                    tAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgc                                                                      <  1:1416373/91‑1 (MQ=255)

                      gATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcgc                                                                    >  1:3211808/1‑91 (MQ=255)

                             aCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcat                                                             <  1:2212901/91‑1 (MQ=255)

                               tCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatca                                                           <  1:54349/91‑1 (MQ=255)

                                cAAAACAGTAAATATAAAGAAATCGCACTTAAAAACATTACTGTTCATAAGTCTGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat                                                          <  1:3861663/91‑1 (MQ=39)

                                cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATATGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat                                                          <  1:3603753/91‑1 (MQ=255)

                                  aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa                                                        >  1:4013960/1‑91 (MQ=255)

                                   aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg                                                       <  1:1606100/91‑1 (MQ=255)

                                    aaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGt                                                      >  1:3346588/1‑91 (MQ=255)

                                     aaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGtt                                                     <  1:575775/91‑1 (MQ=255)

                                      agtaagtaTAAAGAAATCGGACTTATAAACATTTCTGTTTATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGttt                                                    <  1:3864046/91‑1 (MQ=255)

                                       gTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttg                                                   <  1:3805225/91‑1 (MQ=255)

                                       gTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttg                                                   <  1:860088/91‑1 (MQ=255)

                                       gTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttg                                                   <  1:3410681/91‑1 (MQ=255)

                                        tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt                                                  >  1:2197635/1‑91 (MQ=255)

                                        tAAATATAAAGAAATCAGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt                                                  <  1:1092162/91‑1 (MQ=255)

                                         aaaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgtt                                                 <  1:3302349/91‑1 (MQ=255)

                                         aaaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgtt                                                 >  1:748313/1‑91 (MQ=255)

                                         aaaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgtt                                                 <  1:373648/91‑1 (MQ=255)

                                            tataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAGGCGCGCACCCCATCATAAGTTTGTTGAg                                              >  1:1519168/1‑91 (MQ=255)

                                            tataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAGGCGCGCACCCCATCATAAGTTTGTTGAg                                              >  1:1519152/1‑91 (MQ=255)

                                                  gAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACg                                        >  1:3252056/1‑91 (MQ=255)

                                                   atatcggacttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc                                       >  1:938729‑M2/39‑91 (MQ=255)

                                                   atatcggacttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc                                       >  1:935204‑M2/39‑91 (MQ=255)

                                                   aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc                                       <  1:3055154/91‑1 (MQ=255)

                                                   aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc                                       <  1:1912608/91‑1 (MQ=255)

                                                    aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt                                      <  1:1370125/91‑1 (MQ=255)

                                                    aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt                                      <  1:1370236/91‑1 (MQ=255)

                                                    aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt                                      <  1:1678537/91‑1 (MQ=255)

                                                    aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt                                      <  1:3340950/91‑1 (MQ=255)

                                                     ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt                                     >  1:2851918‑M1/1‑91 (MQ=255)

                                                     ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt                                     >  1:2673535‑M1/1‑91 (MQ=255)

                                                     ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt                                     >  1:497669‑M1/1‑91 (MQ=255)

                                                      TCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCttt                                    >  1:2086921‑M1/1‑91 (MQ=255)

                                                      TCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGATCACGCttt                                    >  1:2086757‑M1/1‑91 (MQ=255)

                                                       CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa                                   <  1:1186193‑M1/91‑1 (MQ=255)

                                                       CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa                                   <  1:1186206‑M1/91‑1 (MQ=255)

                                                       CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa                                   <  1:3789180‑M1/91‑1 (MQ=255)

                                                        ggacttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa                                  >  1:2671129‑M2/34‑91 (MQ=255)

                                                        GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa                                  <  1:3841620‑M1/91‑1 (MQ=255)

                                                         GACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaaa                                 >  1:3942061‑M1/1‑91 (MQ=255)

                                                         GACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaaa                                 >  1:3812613‑M1/1‑91 (MQ=255)

                                                          acttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt                                >  1:2883593‑M2/32‑91 (MQ=255)

                                                          ACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt                                >  1:1848887‑M1/1‑91 (MQ=255)

                                                           cttatgaacagaaatctttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCAATCATAAGTTTGTTAAGTTCACGCTTTAAATc                               >  1:3544652‑M2/31‑91 (MQ=255)

                                                           CTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATc                               <  1:2506250‑M1/91‑1 (MQ=255)

                                                           CTTAAAAACATTTCTGTTCATAAGTCCGATATCTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATc                               >  1:4102705‑M1/1‑91 (MQ=255)

                                                            TTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCt                              <  1:909836‑M1/91‑1 (MQ=255)

                                                             TAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtt                             >  1:1283487‑M1/1‑91 (MQ=255)

                                                               ttcaCATTTCTGTTCAGAAGTCCGATATCGTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttta                           <  1:899213/88‑1 (MQ=255)

                                                               aaaaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttta                           >  1:3249858/1‑91 (MQ=255)

                                                                 aaCGTTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttatt                         <  1:3350858/91‑1 (MQ=255)

                                                                 aaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttatt                         <  1:3238024/91‑1 (MQ=255)

                                                                  acagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCGTCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattt                        >  1:365635‑M2/24‑91 (MQ=255)

                                                                   cATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattta                       <  1:3030907/91‑1 (MQ=255)

                                                                    aTTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAg                      <  1:2497431/91‑1 (MQ=255)

                                                                      ttCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGtt                    <  1:2595015/91‑1 (MQ=255)

                                                                      ttCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGtt                    <  1:1219269/91‑1 (MQ=255)

                                                                       tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGTTTTAAATCTTTATTTAGTTg                   >  1:1778812/1‑91 (MQ=255)

                                                                       tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg                   >  1:3167045/1‑91 (MQ=255)

                                                                       tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg                   >  1:1594724/1‑91 (MQ=255)

                                                                        cTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCTCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGa                  <  1:3286255/91‑1 (MQ=255)

                                                                          gTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATg                <  1:1206363/91‑1 (MQ=255)

                                                                             cATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATgggg             <  1:4026543/91‑1 (MQ=255)

                                                                              aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGt            <  1:3638971/91‑1 (MQ=255)

                                                                              aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTGTAAATCTTTATTTAGTTGATGGGGt            >  1:3864181/1‑91 (MQ=255)

                                                                               taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTa           <  1:703164‑M2/81‑1 (MQ=255)

                                                                               taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTa           >  1:2901660‑M2/11‑91 (MQ=255)

                                                                                aagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAc          <  1:2183008‑M2/82‑1 (MQ=255)

                                                                                 agtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGCTGGGGTAct         >  1:3966032‑M2/9‑91 (MQ=255)

                                                                                 agtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAct         >  1:1219653‑M2/9‑91 (MQ=255)

                                                                                  gtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActc        <  1:1877431‑M2/84‑1 (MQ=255)

                                                                                  gtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActc        <  1:2670595‑M2/84‑1 (MQ=255)

                                                                                  gtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActc        <  1:1879007‑M2/84‑1 (MQ=255)

                                                                                    ccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTg      >  1:1378574‑M2/6‑91 (MQ=255)

                                                                                       atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc   >  1:1901623‑M2/3‑91 (MQ=255)

                                                                                       atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc   >  1:1901712‑M2/3‑91 (MQ=255)

                                                                                       atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc   >  1:371135‑M2/3‑91 (MQ=255)

                                                                                       atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc   <  1:3608762‑M2/89‑1 (MQ=255)

                                                                                        tATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGACGGGGTACTCTGAGCt  <  1:1241153‑M2/90‑1 (MQ=255)

AACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT  >  USA300TCH1516_ALE/2357328‑2357506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.