| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2357390 | 64 (0.650) | 12 (0.140) | 8/140 | NT | 15.6% | intergenic (‑340/+198) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | = 2357406 | 74 (0.860) | intergenic (‑356/+182) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
TTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2357295‑2357390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggacttaTGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAATTT < USA300TCH1516_ALE/2357406‑2357318 TTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGG > 1:2600581/1‑91TTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGG < 1:3627215/91‑1TTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGG < 1:3627137/91‑1 TTCACTTCAGTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGA > 1:2083671/1‑91 CACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACT < 1:2220443/91‑1 CACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCATCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACT > 1:3503884/1‑91 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT > 1:1416148/1‑91 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT < 1:1030600/91‑1 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT < 1:3492463/91‑1 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT < 1:3492754/91‑1 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT > 1:3577165/1‑91 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT > 1:1415920/1‑91 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT > 1:1415739/1‑91 ACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTT < 1:1030601/91‑1 CTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA < 1:1344648/91‑1 CTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA < 1:4125091/91‑1 TAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGT < 1:287339/91‑1 TGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTT < 1:491997/91‑1 TGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTT < 1:1062656/91‑1 AAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTA < 1:143649/91‑1 ATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAG < 1:2029014/91‑1 ATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAG < 1:1141309/91‑1 TTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAGT < 1:3999808/91‑1 TTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAGT < 1:3999484/91‑1 TTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAGT < 1:3999471/91‑1 TGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAGTC < 1:2368019/91‑1 CAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT < 1:3726319/91‑1 CATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATT < 1:2655398/91‑1 ATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTG > 1:328931/1‑91 ATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTG > 1:1842515/1‑91 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGA < 1:2494384/91‑1 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGA < 1:124558/91‑1 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGA > 1:3551055/1‑91 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGA < 1:2148132/91‑1 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTATGA > 1:3738615/1‑91 GGACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATC > 1:876411/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAA > 1:1472184/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAA < 1:3357287/91‑1 CTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAAT > 1:819370/1‑91 CTTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAAT > 1:820196/1‑91 TTATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAATT < 1:3246713/91‑1 TATGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAATTT > 1:2396894/1‑91 TTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2357295‑2357390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggacttaTGAACAGAAATGTTTTTAAGTCCGATTTCTTTATATTTACTTTTTTGAGTGCGAATCTAAAAATATGATGAAGCTAGTTTGATCAATTT < USA300TCH1516_ALE/2357406‑2357318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |