| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2494792 | 82 (0.830) | 6 (0.070) | 4/138 | NT | 7.9% | intergenic (‑155/+52) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC |
| ? | USA300TCH1516_ALE | = 2494816 | 70 (0.830) | intergenic (‑179/+28) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC | |||||
ACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2494692‑2494792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatagctatacAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAA < USA300TCH1516_ALE/2494816‑2494727 ACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAA < 1:33844/91‑1 CAAAAAAGCGAAGGTATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAA < 1:2976077/91‑1 CAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAA > 1:2905025/1‑91 AAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAAT > 1:3097104/1‑91 AAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAAT > 1:3350107/1‑91 AAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAAT > 1:2005280/1‑91 AAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAG > 1:1203424/1‑91 AAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAG > 1:2705776/1‑91 AAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAG > 1:2705714/1‑91 AAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGC < 1:3970902/91‑1 AAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCT > 1:2113704/1‑91 AGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTA > 1:2737706/1‑91 AGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTA > 1:314192/1‑91 GCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTAT > 1:1989675/1‑91 CGAAGATATGTCACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATA < 1:3483737/91‑1 CGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATA > 1:716755/1‑91 ACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGC < 1:193833/91‑1 CATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT < 1:178025/91‑1 CATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT < 1:3332986/91‑1 AGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT < 1:2781913/91‑1 TGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTAT < 1:3096654/91‑1 TGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTAT < 1:3096670/91‑1 AATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACT > 1:722853/1‑91 AATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACT > 1:3138212/1‑91 ATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTA < 1:841950/91‑1 ATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTA < 1:3066/91‑1 ATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTA < 1:3001676/91‑1 ATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTA > 1:2028616/1‑91 AGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATG > 1:2979430/1‑91 AGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATG > 1:2341278/1‑91 AGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATG > 1:1732992/1‑91 AGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATG > 1:1022561/1‑91 GCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTATAGTTATTTTAGCTGTCATACTATGT > 1:3867732/1‑91 GCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAGAGTTATTTTAGCTGTCATACTATGT > 1:3870348/1‑91 TATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGC < 1:3127740/91‑1 ATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCT < 1:3653882/91‑1 CAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAA < 1:1311834/91‑1 ACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2494692‑2494792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatagctatacAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAA < USA300TCH1516_ALE/2494816‑2494727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |