| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2525589 | 73 (0.740) | 8 (0.100) | 7/130 | NT | 10.2% | intergenic (‑161/+69) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI |
| ? | USA300TCH1516_ALE | = 2525624 | 82 (1.030) | intergenic (‑196/+34) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI | |||||
ATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2525486‑2525589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgaccgatatatTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGG < USA300TCH1516_ALE/2525624‑2525541 ATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAA < 1:3014012/91‑1ATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAA < 1:2672423/91‑1ATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAA > 1:2437757/1‑91 TCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAG > 1:1224976/1‑91 TCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAG > 1:2605368/1‑91 CACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGC > 1:2368362/1‑91 CATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGA < 1:3787593/91‑1 ATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGAC > 1:1775231/1‑91 ATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTCTTGTTAAATCAAAAAAAGCGAC > 1:1775076/1‑91 ATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGA > 1:222753/1‑91 ATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATC‑AAAAAAGCCACCGATATA > 1:3973945/1‑91 TGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAG < 1:462613/91‑1 CATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCA < 1:1415238/91‑1 ATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCAT < 1:352487/91‑1 ATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATAT < 1:3485672/91‑1 TTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATA < 1:2001878/91‑1 CCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATC < 1:1617568/91‑1 TATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGT < 1:1232800/91‑1 TATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTGGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGT < 1:3499816/91‑1 AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATG > 1:126412/1‑91 AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATG > 1:126175/1‑91 GACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTAT > 1:28178/1‑91 ACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATA < 1:2455225/91‑1 CCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAA > 1:32303/1‑91 GATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGG < 1:2098955/91‑1 ATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2525486‑2525589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgaccgatatatTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGG < USA300TCH1516_ALE/2525624‑2525541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |