| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2633273 | 78 (0.790) | 11 (0.110) +GC |
6/156 | NT | 13.6% | coding (2675/3057 nt) | fnbA_2 | Fibronectin‑binding protein A |
| ? | USA300TCH1516_ALE | = 2633349 | 65 (0.660) | coding (2599/3057 nt) | fnbA_2 | Fibronectin‑binding protein A | |||||
CTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTTGGTACTTCTGGTGTTGGTGGCGTTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2633208‑2633273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGATTGAAGAAGATACAACACCTCCAATC < USA300TCH1516_ALE/2633349‑2633320 || CTTCTGGTGTTGGTGGCGTTGGTGTTTCCGGCTCACTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACC < 1:1643919/91‑1CTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACC < 1:1084614/91‑1 TTCTGGTGTGGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGAGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCT < 1:1417366/91‑1 TTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCT < 1:1407413/91‑1 TCTGGTGTTGGTGGCGTTGGTGTTTCCGGCTCACTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCTC < 1:3245700/91‑1 TCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCTC < 1:2075677/91‑1 CTGGTGTTGGTGGCGTTGGTGTTTCCGGCTCACTTGGTACTTCTGGTGTCGGTCGCGTTGGTGGCACGATTGAAGAAGATACAACACCTCC < 1:3513455/91‑1 CTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCTCC < 1:2014165/91‑1 TGGTGTTGGTGGCGTTGGTGTTTCCGGCTCACTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCTCCA < 1:1835178/91‑1 TGTCGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCTCCAATC < 1:1695590/91‑1 TGTCGGTGGTGTTGGTGTTTCCGGCTCGCTTGGTACTTCTGGTGTCGGTGGCGTTGGTGGCACGATTGAAGAAGATACAACACCTCCAATC < 1:1695648/91‑1 || CTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTTGGTACTTCTGGTGTTGGTGGCGTTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2633208‑2633273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGATTGAAGAAGATACAACACCTCCAATC < USA300TCH1516_ALE/2633349‑2633320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |