| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2651125 | 120 (1.220) | 6 (0.070) | 5/146 | NT | 4.8% | intergenic (+68/‑305) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | = 2651145 | 129 (1.440) | intergenic (+88/‑285) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2651030‑2651125‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcccCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < USA300TCH1516_ALE/2651145‑2651056 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 1:2059342/1‑91ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA < 1:3795232/91‑1 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA > 1:2930939/1‑91 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC > 1:1117822/1‑91 ATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCC < 1:1702905/91‑1 ATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCC < 1:1703044/91‑1 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 1:3767019/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 1:3766600/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 1:506296/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 1:2642242/1‑91 TTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTG < 1:1488440/91‑1 TTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGA < 1:3778878/91‑1 TAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGG < 1:2160387/91‑1 AACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGA < 1:69945/91‑1 CTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATT < 1:693645/91‑1 CTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATT < 1:694437/91‑1 AAATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAA < 1:280226/91‑1 AATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAG < 1:2326936/91‑1 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT > 1:483095/1‑91 TCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTT > 1:1235108/1‑91 CCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTA > 1:1245707/1‑91 CCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTA > 1:1244926/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:553447/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC < 1:1356/91‑1 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:942400/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAgt < 1:3652060/91‑3 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT > 1:683656/1‑91 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2651030‑2651125‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcccCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < USA300TCH1516_ALE/2651145‑2651056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |