BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2651125	120 (1.220)	6 (0.070)	5/146	NT	4.8%	intergenic (+68/‑305)	USA300HOU_RS13635/fbp	hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
*	?	USA300TCH1516_ALE	= 2651145	129 (1.440)	6 (0.070)	5/146	NT	4.8%	intergenic (+88/‑285)	USA300HOU_RS13635/fbp	hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
Rejected: Frequency below/above cutoff threshold.

Only 100 of 160 total aligned reads displayed.

TAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTC  >  USA300TCH1516_ALE/2651055‑2651234

tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                                           >  1:1392637/1‑91 (MQ=255)

tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                                           <  1:1464409/91‑1 (MQ=255)

  gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                                         >  1:553447‑M2/1‑89 (MQ=255)

  gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                                         <  1:1356‑M2/91‑3 (MQ=255)

   tAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggg                                                                                        >  1:1244926‑M2/1‑88 (MQ=255)

    aaCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggga                                                                                       >  1:1235108‑M2/1‑87 (MQ=255)

      cTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggatt                                                                                     <  1:2326936‑M2/91‑7 (MQ=255)

         aaaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGAttttt                                                                                  <  1:3432169/91‑1 (MQ=255)

          aaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGAtttttt                                                                                 >  1:2952084/1‑91 (MQ=255)

           aGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTc                                                                                <  1:1789570/91‑1 (MQ=255)

            gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCa                                                                               <  1:278110/91‑1 (MQ=255)

            gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCa                                                                               >  1:478169/1‑91 (MQ=255)

            gTACTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCTGGGATTTTTTCa                                                                               <  1:3206125/91‑1 (MQ=255)

              aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                                             <  1:1056542/91‑1 (MQ=255)

               ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                            <  1:1030713/91‑1 (MQ=255)

               ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                            >  1:2547055/1‑91 (MQ=255)

               ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                            <  1:3945023/91‑1 (MQ=255)

               ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                            <  1:881388/91‑1 (MQ=255)

                  aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCA‑TTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAt                                                                        >  1:3278804/1‑91 (MQ=255)

                   aTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAt                                                                        <  1:3022532/91‑1 (MQ=255)

                    tGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAtt                                                                       >  1:2607160/1‑91 (MQ=255)

                     gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                                                      >  1:546498/1‑91 (MQ=255)

                     gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                                                      >  1:892363/1‑91 (MQ=255)

                     gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                                                      <  1:2324401/91‑1 (MQ=255)

                       cTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTg                                                                    <  1:3129816/91‑1 (MQ=255)

                        tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg                                                                   >  1:3020259/1‑91 (MQ=255)

                         aaaTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCTAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGa                                                                  <  1:3485491/91‑1 (MQ=255)

                          aaTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaa                                                                 >  1:4007543/1‑91 (MQ=255)

                           aTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaaa                                                                >  1:3525222/1‑91 (MQ=255)

                            tACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAt                                                               >  1:331341/1‑91 (MQ=255)

                            tACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAt                                                               >  1:3986742/1‑91 (MQ=255)

                            tACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAt                                                               <  1:671665/91‑1 (MQ=255)

                             acacacATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAtt                                                              >  1:3173062/1‑91 (MQ=255)

                             acacacATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAtt                                                              <  1:4017669/91‑1 (MQ=255)

                              cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                                             <  1:2786915/91‑1 (MQ=255)

                              cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                                             >  1:1247219/1‑91 (MQ=255)

                               acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                                            >  1:1569528/1‑91 (MQ=255)

                               acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                                            >  1:3553293/1‑91 (MQ=255)

                               acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                                            >  1:618775/1‑91 (MQ=255)

                                cacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCca                                                           <  1:270848/91‑1 (MQ=255)

                                   atatTCCATCGTACTTCAAAATCATTTTCAAATCCCTTCACCCGAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                                                        <  1:4142236/91‑1 (MQ=255)

                                   atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                                                        >  1:2572140/1‑91 (MQ=255)

                                   atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                                                        <  1:2218155/91‑1 (MQ=255)

                                    tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                                                       <  1:2043098/91‑1 (MQ=255)

                                        ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTAc                                                   <  1:2520155/91‑1 (MQ=255)

                                          aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                                                 >  1:2879781/1‑91 (MQ=255)

                                          aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                                                 >  1:720482/1‑91 (MQ=255)

                                             gTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATc                                              <  1:651285/91‑1 (MQ=255)

                                              tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCg                                             <  1:2473672/91‑1 (MQ=255)

                                              tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCg                                             >  1:3831819/1‑91 (MQ=255)

                                              tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCg                                             >  1:2702022/1‑91 (MQ=255)

                                              tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCg                                             <  1:1599063/91‑1 (MQ=255)

                                               aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                            <  1:2172895/91‑1 (MQ=255)

                                               aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                            <  1:205465/91‑1 (MQ=255)

                                               aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                            <  1:3287085/91‑1 (MQ=255)

                                                 ttCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTaa                                          >  1:735617/1‑91 (MQ=255)

                                                  tCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAt                                         >  1:3407819/1‑91 (MQ=255)

                                                  tCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAt                                         >  1:844083/1‑91 (MQ=255)

                                                    aaaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAttt                                       <  1:4120392/91‑1 (MQ=255)

                                                    aaaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAttt                                       >  1:2557237/1‑91 (MQ=255)

                                                       aTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttttt                                    <  1:754991/91‑1 (MQ=255)

                                                         cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                  >  1:923637/1‑91 (MQ=255)

                                                         cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                  <  1:2241031/91‑1 (MQ=255)

                                                         cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                  >  1:3069536/1‑91 (MQ=255)

                                                         cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTGTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                  <  1:1889441/91‑1 (MQ=255)

                                                           ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa                                >  1:3618972/1‑91 (MQ=255)

                                                           ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa                                >  1:2751692/1‑91 (MQ=255)

                                                            tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa                               >  1:2106040/1‑91 (MQ=255)

                                                            tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa                               >  1:2105754/1‑91 (MQ=255)

                                                             ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa                              <  1:1248058/91‑1 (MQ=255)

                                                              tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc                             <  1:1625295/91‑1 (MQ=255)

                                                              tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc                             <  1:1927063/91‑1 (MQ=255)

                                                              tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc                             <  1:1625296/91‑1 (MQ=255)

                                                               cAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACt                            >  1:48882/1‑91 (MQ=255)

                                                                 aaTCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaag                          <  1:694437‑M2/91‑66 (MQ=255)

                                                                 aaTCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaag                          <  1:693645‑M2/91‑66 (MQ=255)

                                                                   tCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagtt                        <  1:69945‑M2/91‑68 (MQ=255)

                                                                   tCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTg                        <  1:3118365/91‑1 (MQ=255)

                                                                       ttCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAata                    <  1:2827429/91‑1 (MQ=255)

                                                                       ttCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAata                    <  1:2827235/91‑1 (MQ=255)

                                                                       ttCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAata                    <  1:2825972/91‑1 (MQ=255)

                                                                        tCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttactaa                   <  1:3778878‑M2/91‑73 (MQ=255)

                                                                        tCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAatat                   <  1:1023365/91‑1 (MQ=255)

                                                                        tCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAatat                   <  1:3622204/91‑1 (MQ=255)

                                                                        tCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAatat                   <  1:419174/91‑1 (MQ=255)

                                                                         cACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttactaaa                  <  1:1488440‑M2/91‑74 (MQ=255)

                                                                         cACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAtata                  <  1:107005/91‑1 (MQ=255)

                                                                             cAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACaa              >  1:1836748/1‑91 (MQ=255)

                                                                              aaaTAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACaaa             >  1:2242436/1‑91 (MQ=255)

                                                                               aataatGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAAt            >  1:3831980/1‑91 (MQ=255)

                                                                                ataatGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATc           >  1:1181730/1‑91 (MQ=255)

                                                                                   atGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcct        >  1:360992/1‑91 (MQ=255)

                                                                                    tGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctc       <  1:4098065/91‑1 (MQ=255)

                                                                                    tGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctc       <  1:1331085/91‑1 (MQ=255)

                                                                                     ggTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcc      >  1:3898012/1‑91 (MQ=255)

                                                                                     ggTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcc      <  1:2172609/91‑1 (MQ=255)

                                                                                     ggTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcc      >  1:3898431/1‑91 (MQ=255)

                                                                                      gTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct     <  1:1300782/91‑1 (MQ=255)

                                                                                         cGGGGATTTTTTCATCCAAGTTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCtctc  <  1:3601487/91‑1 (MQ=255)

                                                                                         cGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATACCTCCtctc  >  1:3981982/1‑91 (MQ=255)

TAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTC  >  USA300TCH1516_ALE/2651055‑2651234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.