| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2687471 = | 83 (0.840) | 14 (0.170) | 6/138 | NT | 19.8% | intergenic (+25/+44) | clpL/USA300HOU_RS13835 | ATP‑dependent Clp protease ATP‑binding subunit ClpL/hypothetical protein |
| ? | USA300TCH1516_ALE | 2687511 = | 42 (0.500) | intergenic (+65/+4) | clpL/USA300HOU_RS13835 | ATP‑dependent Clp protease ATP‑binding subunit ClpL/hypothetical protein | |||||
ATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2687570‑2687471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctca‑tttttTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTT > USA300TCH1516_ALE/2687511‑2687600 ATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATG > 1:521600/1‑91 TCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGC > 1:3442160/1‑91 TCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGC > 1:1294656/1‑91 TCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGC > 1:3442419/1‑91 TCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGC > 1:38293/1‑91 TGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA > 1:2597979/1‑91 GATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGATCTGATGCTCA‑T > 1:3760616/1‑91 GATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑T > 1:1047745/1‑91 ATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TT < 1:3605773/91‑1 ATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TT < 1:2547446/91‑1 TTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTT < 1:1337077/91‑1 GTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTT < 1:1435929/91‑1 GTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTT > 1:2835400/1‑91 AAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAA > 1:2846591/1‑91 TGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCA > 1:869962/1‑91 TGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCA > 1:3113362/1‑91 TGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCA > 1:875592/1‑91 AGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACG > 1:1745485/1‑91 AGCACAGGCAAGGGCGAACTGATGCTAA‑TTTTTTTCATTATTTCCCGGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACG > 1:3297405/1‑91 GCACAGGCAAGGGCGACCTGATGCTCATTTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACG > 1:2211259/1‑91 GCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGA > 1:2759376/1‑91 GCACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGA > 1:3068004/1‑91 CACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGAT > 1:1261859/1‑91 CACAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGAT > 1:2276377/1‑91 CAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTA > 1:1757120/1‑91 CAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTA > 1:363311/1‑91 CAGGCAAGGGCGACCTGATGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTA > 1:363960/1‑91 TGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACAT > 1:2495672/1‑91 TGCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACAT > 1:2495609/1‑91 GCTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATT > 1:3664220/1‑91 CTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTT < 1:1193043/91‑1 CTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTT < 1:1349747/91‑1 CTCA‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTT < 1:3225816/91‑1 A‑TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCC < 1:2755711/91‑1 TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCT < 1:3659698/91‑1 TTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCT > 1:3129501/1‑91 TTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTT < 1:199778/91‑1 TTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTG > 1:742470/1‑91 TTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTT > 1:2733785/1‑91 ATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCA‑TTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2687570‑2687471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctca‑tttttTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTT > USA300TCH1516_ALE/2687511‑2687600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |