| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2787502 = | 90 (0.920) | 13 (0.150) | 9/142 | NT | 14.5% | intergenic (+48/‑192) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | 2787547 = | 74 (0.850) | intergenic (+93/‑147) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR | |||||
ATTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2787599‑2787502‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAAT > USA300TCH1516_ALE/2787547‑2787636 ATTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCAC < 1:707027/91‑1 TAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTG > 1:3920964/1‑91 TAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTG > 1:809929/1‑91 TAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTG > 1:3920858/1‑91 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC < 1:2131713/91‑1 AAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCT > 1:1544122/1‑91 AGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTG < 1:1830485/91‑1 AGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTG < 1:1831312/91‑1 AGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTG > 1:2344081/1‑91 GCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGT > 1:476493/1‑91 GCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGT < 1:1826113/91‑1 TGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCAT > 1:783163/1‑91 AGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTT > 1:3108013/1‑91 ACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGC > 1:2203271/1‑91 ACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGC > 1:3649046/1‑91 ACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGC > 1:2204245/1‑91 ACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGC > 1:1032477/1‑91 AGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTT > 1:1821884/1‑91 CAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTA > 1:1597821/1‑91 CAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTA > 1:782970/1‑91 AGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAA > 1:3723841/1‑91 GTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTAGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTGTAAT > 1:1236017/1‑91 AGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTC > 1:2660795/1‑91 TATTTCAAATAGAAAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTAATT > 1:3216910/1‑91 ACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGATGTATGTATAAGCTCTCATGT > 1:3887546/1‑91 ACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGT < 1:1100353/91‑1 ACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGT < 1:4099355/91‑1 CTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT < 1:2749291/91‑1 CTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT < 1:1485844/91‑1 CTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAA < 1:135085/91‑1 TGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAAT < 1:2819650/91‑1 TTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAA > 1:293104/1‑91 TTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAA > 1:1185027/1‑91 TCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAAT < 1:726183/91‑1 ATTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2787599‑2787502‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAAT > USA300TCH1516_ALE/2787547‑2787636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |