| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2850830 | 70 (0.710) | 6 (0.070) | 4/132 | NT | 9.2% | intergenic (+29/+90) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2850851 | 60 (0.740) | intergenic (+50/+69) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
GCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2850727‑2850830‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaaAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCA < USA300TCH1516_ALE/2850851‑2850765 GCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAAC > 1:1659488/1‑91GCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAAC > 1:2835595/1‑91 GGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAA > 1:3027804/1‑91 TTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGC > 1:740716/1‑91 TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCA < 1:3753922/91‑1 TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCA > 1:2520640/1‑91 TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTAGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCA < 1:1028006/91‑1 ACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACC > 1:3661666/1‑91 ACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACC < 1:2586404/91‑1 CTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTCCACCTAGCCCTGGACACAACGGAATAGGTATAAGTGCACAAACAAAATCACCC > 1:3855001/1‑91 CTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCC > 1:2281216/1‑91 TGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT < 1:1039493/91‑1 TGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT < 1:546846/91‑1 CAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA > 1:2517723/1‑91 AATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAA < 1:586908/91‑1 AATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAA < 1:4147138/91‑1 GATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATT < 1:3896306/91‑1 TGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAG < 1:1773366/91‑1 AGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGG < 1:2038494/91‑1 AGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGG < 1:1884149/91‑1 CAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTG < 1:2288056/91‑1 CAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTG < 1:920821/91‑1 CAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTG < 1:568047/91‑1 CAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTG < 1:3819585/91‑1 CAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTG > 1:1618995/1‑91 AAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGT > 1:1351053/1‑91 AAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGT < 1:3248946/91‑1 AAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGT < 1:4076604/91‑1 AAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGT < 1:3246687/91‑1 AAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTA < 1:3528214/91‑1 AAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTA > 1:1300622/1‑91 AAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTA < 1:1122121/91‑1 AAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAA < 1:731730/91‑1 CACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATC > 1:1610379/1‑91 CCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCT < 1:3286326/91‑1 CCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTC > 1:855379/1‑91 CTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCA > 1:1596947/1‑91 CTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCA < 1:2824166/91‑1 CTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCA > 1:916575/1‑91 CTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCA > 1:2132167/1‑91 GCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2850727‑2850830‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaaAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCA < USA300TCH1516_ALE/2850851‑2850765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |