BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 997	3489 (0.350)	632 (0.070)	58/138	NT	17.7%	intergenic (+9/+6)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein
*	?	NC_012417	= 1001	2877 (0.330)	632 (0.070)	58/138	NT	17.7%	intergenic (+13/+2)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein

Only 100 of 3703 total aligned reads displayed.

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/897‑997

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacattagtCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  <  NC_012417/1001‑912

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                      >  1:2591276/1‑91

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                      >  1:1503818/1‑91

 GCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAA                                                                                                     <  1:806225/91‑1

 GCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAA                                                                                                     >  1:1298540/1‑91

  CAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG                                                                                                    <  1:2802807/91‑1

  CAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG                                                                                                    <  1:3018771/91‑1

   AAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA                                                                                                   <  1:2035419/91‑1

   AAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA                                                                                                   >  1:4054634/1‑91

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  >  1:3421366/1‑91

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  1:2979209/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  1:3565691/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  >  1:457616/1‑91

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  1:2507978/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  1:594771/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATGATTATTTAAGAC                                                                                                  <  1:3176249/91‑1

     GTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACA                                                                                                 >  1:846899/1‑91

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:1646479/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:1723521/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                >  1:2758671/1‑91

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:2469789/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:699509/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:652209/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:1228767/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:378822/91‑1

       GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  1:2942634/91‑1

       GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  1:1856000/91‑1

       GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  1:2386166/91‑1

       GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  1:3710817/91‑1

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  1:77118/1‑91

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  1:3134837/1‑91

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  1:92202/1‑91

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  1:1537197/1‑91

          GAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT                                                                                            >  1:393177/1‑91

           AAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTC                                                                                           <  1:2295949/91‑1

              aaAAAACAACAGACAAAGAAAAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:4123390/89‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:3488071/91‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:1342966/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  1:1958434/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  1:1681318/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  1:1170812/91‑1

                AAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  1:3520672/91‑1

                AAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  1:3207880/91‑1

                AAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  1:1786303/91‑1

                 AAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACT                                                                                     <  1:1032969/91‑1

                 AAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACT                                                                                     <  1:881277/91‑1

                   ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAA                                                                                   <  1:1000134/91‑1

                   ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAA                                                                                   <  1:2839474/91‑1

                     AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATG                                                                                 <  1:3380286/91‑1

                     AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATG                                                                                 <  1:960757/91‑1

                     AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATG                                                                                 <  1:290714/91‑1

                        AGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATGTCT                                                                              <  1:2265543/91‑1

                          ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATGTCTTA                                                                            <  1:262817/91‑1

                                                                        tcaaCAAAATTATTATTTAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATG                              <  1:2877747/87‑1

                                                                                ATTATTATTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTT                      >  1:561786/1‑91

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            >  1:3296787/1‑91

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  1:3827795/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  1:1889625/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            >  1:1754426/1‑91

                                                                                           AGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCT           >  1:3643812/1‑91

                                                                                            GACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          <  1:425170/91‑1

                                                                                            GACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          >  1:3444770/1‑91

                                                                                            GACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          >  1:389960/1‑91

                                                                                            GACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          >  1:1198527/1‑91

                                                                                            GACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          >  1:200138/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:529228/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:1068860/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         >  1:1417506/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:1264396/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         >  1:4019575/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:1934176/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:3679648/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         >  1:3065411/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:3599980/91‑1

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTc       >  1:2158821/1‑90

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:2226874/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:2421665/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:497541/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:3619393/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       <  1:3093385/91‑1

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:1118158/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:3749180/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:735936/1‑91

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      <  1:1609153/91‑1

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      <  1:2671689/91‑1

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      <  1:3258815/91‑1

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      >  1:2113160/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:1452722/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:4094025/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:622501/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:3981865/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:2187747/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTCAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:3333645/1‑91

                                                                                                  AGTCAACGCTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    <  1:2076190/91‑1

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    <  1:2335614/91‑1

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    <  1:1569093/91‑1

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    >  1:1815122/1‑91

                                                                                                   GTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTT   <  1:1381460/91‑1

                                                                                                   GTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTT   >  1:255034/1‑91

                                                                                                    TCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  >  1:2715797/1‑91

                                                                                                    TCAACACTAATGTCTTAAATAATAAGTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  <  1:3860892/91‑1

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/897‑997

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacattagtCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  <  NC_012417/1001‑912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.