| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 22206 | 71 (0.720) | 5 (0.060) | 4/142 | NT | 6.8% | intergenic (+19/‑259) | dnaC/purA | Replicative DNA helicase/Adenylosuccinate synthetase |
| ? | USA300TCH1516_ALE | = 22224 | 74 (0.850) | intergenic (+37/‑241) | dnaC/purA | Replicative DNA helicase/Adenylosuccinate synthetase | |||||
CAGGCACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/22108‑22206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtacaatTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTGTT < USA300TCH1516_ALE/22224‑22135 CAGGCACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTC > 1:955227/1‑91 GGCACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCG < 1:2667509/91‑1 GCACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGT > 1:150260/1‑91 CACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTA < 1:2120243/91‑1 ACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTAC > 1:82849/1‑91 ACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTAC > 1:2366950/1‑91 AGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAA > 1:3960111/1‑91 AGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAA > 1:2510881/1‑91 AGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAA > 1:2510882/1‑91 GTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAAT > 1:447814/1‑91 GTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAAT > 1:3340916/1‑91 AACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAATTTTATCATCTTAATGATTA < 1:796216/91‑1 TATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAATTTTATCATCTTAATGATTATTGTA < 1:552207/91‑1 TATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAATTTTATCATCTTAATGATTATTGTA < 1:552097/91‑1 TAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAATTTTATCATCTTAATGATTATTGTACGGAA < 1:3527790/91‑1 TTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATA < 1:3124500/91‑1 CCGTACAATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTTCATAATCGATATCGGTAAATTTATT > 1:3871232/1‑91 GTACAATTTTATCATCTTAATGATTATTGTACGGAAACACTTTTTTACATCCTATCTGCATGTGCCTAATCGATATCGGTAAATTTATTAT > 1:3851057/1‑91 GTACAATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTAT < 1:3429374/91‑1 ACAATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATAT < 1:2204562/91‑1 ACAATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATAT > 1:3842732/1‑91 ACAATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATAT < 1:2203290/91‑1 AATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTG > 1:1206059/1‑91 ATTTTATCATCTTAATGATTATTGTACGGAAAAGCTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTGT < 1:3392874/91‑1 ATTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTGT < 1:752678/91‑1 TTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTGTT < 1:593905/91‑1 TTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTGTT < 1:2483282/91‑1 CAGGCACAGTTAAGTTACATTTTATGAAACAATATAATAAATTTACCGATATCGATTATGCACATGCAGATATGATGTAAAAAAGTTTTTCCGTACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/22108‑22206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtacaatTTTATCATCTTAATGATTATTGTACGGAAAAACTTTTTTACATCATATCTGCATGTGCATAATCGATATCGGTAAATTTATTATATTGTT < USA300TCH1516_ALE/22224‑22135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |