| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42564 = | 51 (0.520) | 35 (0.470) +TACATTATAAAATACATATC |
9/120 | NT | 47.8% | coding (1402/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1803072 = | NA (NA) | coding (796/807 nt) | USA300HOU_RS12765 | hypothetical protein | |||||
AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42604‑42564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTA > USA300TCH1516_ALE/1803072‑1803155 |||||||||||||||||||| AATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:4098687/91‑1 ATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATA < 1:2865580/91‑1 ATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATA < 1:2864830/91‑1 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATgg < 1:2689457/91‑3 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 1:986078/91‑1 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 1:2851164/91‑1 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 1:2462978/91‑1 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 1:1357556/91‑1 TGGCACGTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 1:254475/91‑1 GGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGA < 1:142080/91‑1 GGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGA < 1:2804699/91‑1 GCACTTAATATAAGGAAAATAGCAGCGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAA < 1:2008661/91‑1 CACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAA < 1:194837/91‑1 CACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATGGAAA < 1:2496041/91‑1 CACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:1911017/91‑1 CACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:3907927/91‑1 CACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:3504429/91‑1 aaTTAATATGAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:3972164/89‑1 ACTTAATATAAGGAAAATAGCAGCTCAGCGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:3360670/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATGGAAAT < 1:2792677/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATGGAAAT < 1:1424074/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATGGAAAT < 1:3683464/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATGGAAAT < 1:3682649/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:55715/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:1163485/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:3097714/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:2866149/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:2614591/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:2614557/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:215160/91‑1 CTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATC < 1:1961727/91‑1 TTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCA < 1:3432344/91‑1 TATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTT < 1:3132406/91‑1 ATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAATGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTT < 1:3513438/91‑1 ATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAACGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTT < 1:3513437/91‑1 AATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTG < 1:3431906/91‑1 AATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTG < 1:3432624/91‑1 ATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGC > 1:3431890/1‑91 ACATATCAAAAAAGCTGATTTCTATCAAATAATTAATTGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTA > 1:3501598/1‑91 |||||||||||||||||||| AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42604‑42564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTA > USA300TCH1516_ALE/1803072‑1803155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |