| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 221178 = | 63 (0.640) | 10 (0.110) | 7/146 | NT | 14.4% | intergenic (‑224/+50) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | 221218 = | 61 (0.680) | intergenic (‑264/+10) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
AACATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/221274‑221178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTC > USA300TCH1516_ALE/221218‑221307 AACATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:1248415/91‑1AACATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:978143/91‑1 ACATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC > 1:3478362/1‑91 ATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTG < 1:1595244/91‑1 ATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTG < 1:3060784/91‑1 ATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCAT‑AGGTGACGCGCCTGT < 1:1463043/91‑1 GCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTT > 1:960266/1‑91 GCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTT > 1:960074/1‑91 GCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTATAGTACGCATTATTTAGCTTCAAATAATTGATCGCCAAATG > 1:3328065/1‑91 GCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATG > 1:3328001/1‑91 GTGCGTATACCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTT > 1:2139846/1‑91 GCGTATACCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCA > 1:3146505/1‑91 CGTATACCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAC > 1:3655506/1‑91 ATACCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTT > 1:1598156/1‑91 TACCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTG > 1:304903/1‑91 CCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTT > 1:994968/1‑91 CCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTT > 1:1463866/1‑91 CCTTCATAAGGTGACGCGCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTT > 1:2945088/1‑91 CCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAA < 1:2933745/91‑1 CCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAA < 1:3965464/91‑1 CCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAA < 1:2933714/91‑1 CTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAAT > 1:3644116/1‑91 TGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGCTTTGTCATG > 1:3727843/1‑91 TGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGATTTGTCATG > 1:3729388/1‑91 GTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGT > 1:2435109/1‑91 TTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTT > 1:2749808/1‑91 TTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTT > 1:2749257/1‑91 TATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTC < 1:184777/91‑1 TATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTC < 1:3759361/91‑1 AACATGGCAACATTTCATTTGGCGATCAATTATTTGAAGCTAAATAATGCTTACTATAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/221274‑221178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTC > USA300TCH1516_ALE/221218‑221307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |