| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 221178 = | 63 (0.640) | 10 (0.110) | 7/146 | NT | 14.4% | intergenic (‑224/+50) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | 221218 = | 61 (0.680) | intergenic (‑264/+10) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
Only 100 of 129 total aligned reads displayed.
GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGC > USA300TCH1516_ALE/221088‑221268 | gaaacattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactata < 1:3759361‑M1/1‑1 (MQ=255)gaaacattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactata < 1:184777‑M1/1‑1 (MQ=255)gAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA < 1:3047790‑M1/91‑1 (MQ=255)gAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA > 1:3246650‑M1/1‑91 (MQ=255) aacattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactataaa > 1:2749808‑M1/89‑91 (MQ=255) acattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAAc > 1:2435109‑M1/88‑91 (MQ=255) catgacaaatcttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACa > 1:3729388‑M1/87‑91 (MQ=255) ggggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAAGTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG < 1:3596929‑M1/91‑1 (MQ=255) ggggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG < 1:3968676‑M1/91‑1 (MQ=255) attacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAg > 1:3644116‑M1/86‑91 (MQ=255) ttacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAgg < 1:2933714‑M1/7‑1 (MQ=255) ttacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAgg < 1:3965464‑M1/7‑1 (MQ=255) gggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG < 1:1770406‑M1/91‑1 (MQ=255) ggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGgc > 1:2061809/1‑91 (MQ=255) tttAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGcgcg > 1:721265/1‑91 (MQ=255) ttAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGt < 1:1078426/91‑1 (MQ=255) tAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTc < 1:2569999/91‑1 (MQ=255) tAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTc > 1:3559591/1‑91 (MQ=255) aTTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCAc < 1:94157/91‑1 (MQ=255) gatgatCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCtt < 1:508343/91‑1 (MQ=255) atgatCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTa < 1:3521094/91‑1 (MQ=255) tgatCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTAt < 1:2669264/91‑1 (MQ=255) tgatCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTAt < 1:484836/91‑1 (MQ=255) tCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa < 1:1530467/91‑1 (MQ=255) tCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa > 1:42587/1‑91 (MQ=255) cTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAg > 1:1668870/1‑91 (MQ=255) cTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAg > 1:1947381/1‑91 (MQ=255) aacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAgg > 1:1463866‑M1/67‑91 (MQ=255) aacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAgg > 1:2945088‑M1/67‑91 (MQ=255) aaaaTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggt < 1:3342564‑M1/91‑21 (MQ=255) aaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGtat > 1:1598156‑M1/64‑91 (MQ=255) aaTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGtata < 1:2366797/91‑1 (MQ=255) aaTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGtata < 1:3160419/91‑1 (MQ=255) aaTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGtata < 1:1631882/91‑1 (MQ=255) aaTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGtata < 1:3467082/91‑1 (MQ=255) aTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATAc > 1:2309381/1‑91 (MQ=255) aTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATAc > 1:251330/1‑91 (MQ=255) gtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACg > 1:3655506‑M1/61‑91 (MQ=255) tgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGc > 1:3146505‑M1/60‑91 (MQ=255) cAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCa > 1:2024167/1‑91 (MQ=255) aacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCAc > 1:2139846‑M1/58‑91 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggtgacgcgc < 1:605376‑M1/91‑28 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggtgacgcgc < 1:57233‑M1/91‑28 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc > 1:946037‑M2/1‑90 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc < 1:2745913‑M2/91‑2 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc > 1:2898655‑M2/1‑90 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAGACAGGtgcgtataccttcataaggtgacgcgcc < 1:2743157‑M1/91‑29 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggtgacgcgcc < 1:2742975‑M1/91‑29 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggtgacgcgcc < 1:663824‑M1/91‑29 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggtgacgcgcc < 1:2642633‑M1/91‑29 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcc > 1:4101817‑M2/1‑89 (MQ=255) aaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcct < 1:1117375‑M2/91‑4 (MQ=255) aaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcct < 1:1801905‑M2/91‑4 (MQ=255) tttAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataaggtgacgcgcctgt < 1:115‑M1/91‑32 (MQ=255) tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttt < 1:3088512‑M2/91‑8 (MQ=255) tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttt < 1:3369415‑M2/91‑8 (MQ=255) tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttt > 1:244788‑M2/1‑84 (MQ=255) aGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtat > 1:2627443/1‑91 (MQ=255) ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata > 1:2551266/1‑91 (MQ=255) gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa < 1:2867833/91‑1 (MQ=255) gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg > 1:492004/1‑91 (MQ=255) gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg > 1:513051/1‑91 (MQ=255) catttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGc > 1:3328001‑M1/43‑91 (MQ=255) aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta < 1:463459/91‑1 (MQ=255) aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta < 1:3974811/91‑1 (MQ=255) aCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattat > 1:1314080/1‑91 (MQ=255) aCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattat > 1:3569101/1‑91 (MQ=255) aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt > 1:3939072/1‑91 (MQ=255) tgatgCTGCAAAATACAATAGCAAAGAAAAAACAGGtgcgtataccttcataagatgacgcgcctgttttttctttgctattgtattttgc < 1:2777393‑M1/91‑56 (MQ=255) gatgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCa < 1:1016805/91‑1 (MQ=255) gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat < 1:970373/91‑1 (MQ=255) gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat < 1:970462/91‑1 (MQ=255) ctgcAAAATACAATAGCAAAGAAAAAACATGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata < 1:3814604/91‑1 (MQ=255) ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata > 1:1559631/1‑91 (MQ=255) tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACTCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa < 1:3492099/91‑1 (MQ=255) tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa < 1:1766184/91‑1 (MQ=255) tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa < 1:1331174/91‑1 (MQ=255) tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTGAGCTTCAaataa < 1:3183970/91‑1 (MQ=255) gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCATCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatca < 1:2777393‑M2/91‑37 (MQ=255) gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatca < 1:2368312‑M2/91‑37 (MQ=255) gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat > 1:2735435/1‑91 (MQ=255) aTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATc < 1:3000895/91‑1 (MQ=255) aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc > 1:3662369/1‑91 (MQ=255) aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc > 1:3558127/1‑91 (MQ=255) aaTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCa < 1:2889028/91‑1 (MQ=255) aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa > 1:2574838/1‑91 (MQ=255) aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa > 1:783384/1‑91 (MQ=255) tAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaa < 1:633620/91‑1 (MQ=255) aGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaat < 1:962432/91‑1 (MQ=255) aGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat > 1:1289391/1‑91 (MQ=255) gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccc < 1:3640155‑M2/91‑55 (MQ=255) gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg > 1:2260016/1‑91 (MQ=255) gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg > 1:2391142/1‑91 (MQ=255) gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg > 1:844696/1‑91 (MQ=255) gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg > 1:2391163/1‑91 (MQ=255) aaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTg < 1:1701382/91‑1 (MQ=255) aaaCAGGtgcgtataccttcataaggtgacgcgcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctcccctta > 1:244788‑M1/1‑7 (MQ=255) aaaCAGGtgcgtataccttcataaggtgacgcgcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctcccctta < 1:3088512‑M1/91‑85 (MQ=255) aaaCAGGtgcgtataccttcataaggtgacgcgcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctcccctta < 1:3369415‑M1/91‑85 (MQ=255) AAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc > 1:960074‑M1/1‑91 (MQ=255) | GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGC > USA300TCH1516_ALE/221088‑221268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |