| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 221184 | 65 (0.660) | 15 (0.170) | 6/146 | NT | 20.0% | intergenic (‑230/+44) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 221210 | 61 (0.680) | intergenic (‑256/+18) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/221088‑221184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaggTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT < USA300TCH1516_ALE/221210‑221121 GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA > 1:3246650/1‑91GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA < 1:3047790/91‑1 GGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACA < 1:2613545/91‑1 GGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAAGTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG < 1:3596929/91‑1 GGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG < 1:3968676/91‑1 GGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG > 1:2524341/1‑91 GGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG < 1:1770406/91‑1 AAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGT < 1:3342564/91‑1 AAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:884857/91‑1 AAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:57121/91‑1 AAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:57233/91‑1 AAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:605376/91‑1 AAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:1361590/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAGACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:2743157/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:2742975/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:2642633/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:663824/91‑1 TTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGT < 1:655/91‑1 TTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGT < 1:115/91‑1 GGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTC < 1:3640155/91‑1 TGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGC < 1:2368312/91‑1 TGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGATGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGC < 1:2777393/91‑1 AAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTA < 1:3369415/91‑1 AAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTA < 1:3088512/91‑1 AAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTA > 1:244788/1‑91 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT < 1:1801905/91‑1 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT < 1:1117375/91‑1 GGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTT > 1:4101817/1‑91 GTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT > 1:2898655/1‑91 GTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT < 1:2745913/91‑1 GTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT > 1:946037/1‑91 GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/221088‑221184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaggTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT < USA300TCH1516_ALE/221210‑221121 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |