BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 221184	65 (0.660)	15 (0.170)	6/146	NT	20.0%	intergenic (‑230/+44)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component
*	?	USA300TCH1516_ALE	= 221210	61 (0.680)	15 (0.170)	6/146	NT	20.0%	intergenic (‑256/+18)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component

Only 100 of 101 total aligned reads displayed.

CAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTT  >  USA300TCH1516_ALE/221120‑221297

cAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCa                                                                                         >  1:2024167/1‑91 (MQ=255)

 aacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCAc                                                                                        >  1:2139846‑M1/58‑91 (MQ=255)

 aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc                                                                                        >  1:946037‑M2/1‑90 (MQ=255)

 aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc                                                                                        >  1:2898655‑M2/1‑90 (MQ=255)

 aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc                                                                                        <  1:2745913‑M2/91‑2 (MQ=255)

  aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcc                                                                                       >  1:4101817‑M2/1‑89 (MQ=255)

   aaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcct                                                                                      <  1:1117375‑M2/91‑4 (MQ=255)

   aaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcct                                                                                      <  1:1801905‑M2/91‑4 (MQ=255)

       tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttt                                                                                  <  1:3369415‑M2/91‑8 (MQ=255)

       tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttt                                                                                  <  1:3088512‑M2/91‑8 (MQ=255)

       tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttt                                                                                  >  1:244788‑M2/1‑84 (MQ=255)

         aGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtat                                                                                >  1:2627443/1‑91 (MQ=255)

          ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata                                                                               >  1:2551266/1‑91 (MQ=255)

             gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                            <  1:2867833/91‑1 (MQ=255)

             gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                            <  1:1739975/91‑1 (MQ=255)

             gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                            >  1:1613661/1‑91 (MQ=255)

              agagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTaa                                                                           <  1:4083519/91‑1 (MQ=255)

               gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg                                                                          >  1:513051/1‑91 (MQ=255)

               gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg                                                                          >  1:492004/1‑91 (MQ=255)

               gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg                                                                          <  1:1857714/91‑1 (MQ=255)

                catttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGc                                                                         >  1:3328001‑M1/43‑91 (MQ=255)

                catttggcgatcaattatttgaagctaaataatgcgtactatAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGc                                                                         >  1:3328065‑M1/43‑91 (MQ=255)

                    aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                     <  1:3471119/91‑1 (MQ=255)

                    aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                     <  1:3974811/91‑1 (MQ=255)

                    aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                     <  1:463459/91‑1 (MQ=255)

                    aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                     <  1:463512/91‑1 (MQ=255)

                     aCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattat                                                                    >  1:3569101/1‑91 (MQ=255)

                     aCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattat                                                                    >  1:1314080/1‑91 (MQ=255)

                      cTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattatt                                                                   <  1:11778/91‑1 (MQ=255)

                        aTCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTa                                                                 <  1:2391850/91‑1 (MQ=255)

                           aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt                                                              >  1:3939072/1‑91 (MQ=255)

                              gatgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCa                                                           <  1:1016805/91‑1 (MQ=255)

                              gatgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCa                                                           >  1:2715316/1‑91 (MQ=255)

                                 gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat                                                        <  1:970373/91‑1 (MQ=255)

                                 gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat                                                        <  1:970462/91‑1 (MQ=255)

                                  ctgcAAAATACAATAGCAAAGAAAATACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                       <  1:3862164/91‑1 (MQ=255)

                                  ctgcAAAATACAATAGCAAAGAAAAAACATGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                       <  1:3814604/91‑1 (MQ=255)

                                  ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                       >  1:1559631/1‑91 (MQ=255)

                                   tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACTCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa                                                      <  1:3492099/91‑1 (MQ=255)

                                   tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa                                                      <  1:1331174/91‑1 (MQ=255)

                                   tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa                                                      <  1:1766184/91‑1 (MQ=255)

                                   tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTGAGCTTCAaataa                                                      <  1:3183970/91‑1 (MQ=255)

                                    gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCATCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatca                                                     <  1:2777393‑M2/91‑37 (MQ=255)

                                    gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatca                                                     <  1:2368312‑M2/91‑37 (MQ=255)

                                    gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat                                                     >  1:2735435/1‑91 (MQ=255)

                                         aTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATc                                                <  1:3000895/91‑1 (MQ=255)

                                           aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc                                              >  1:3558127/1‑91 (MQ=255)

                                           aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc                                              >  1:3662369/1‑91 (MQ=255)

                                             aaTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCa                                            <  1:2889028/91‑1 (MQ=255)

                                              aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa                                           >  1:783384/1‑91 (MQ=255)

                                              aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa                                           >  1:2574838/1‑91 (MQ=255)

                                               tAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaa                                          <  1:633620/91‑1 (MQ=255)

                                                aGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGGTCGCCaaat                                         <  1:2087864/91‑1 (MQ=255)

                                                aGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaat                                         <  1:962432/91‑1 (MQ=255)

                                                     aGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat                                    >  1:1289391/1‑91 (MQ=255)

                                                      gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccc                                   <  1:3640155‑M2/91‑55 (MQ=255)

                                                      gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg                                   >  1:2260016/1‑91 (MQ=255)

                                                      gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg                                   >  1:2391142/1‑91 (MQ=255)

                                                      gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg                                   >  1:2391163/1‑91 (MQ=255)

                                                      gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg                                   >  1:844696/1‑91 (MQ=255)

                                                         aaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTg                                <  1:1701382/91‑1 (MQ=255)

                                                          AAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc                               >  1:960074‑M1/1‑91 (MQ=255)

                                                          AAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc                               >  1:960266‑M1/1‑91 (MQ=255)

                                                            aCAGGCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaa                             <  1:115‑M2/91‑61 (MQ=255)

                                                            aCAGGCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaa                             <  1:655‑M2/91‑61 (MQ=255)

                                                            ACAGGCGCGTCACCT‑ATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                            <  1:1463043‑M1/91‑1 (MQ=255)

                                                             CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                            <  1:3060784‑M1/91‑1 (MQ=255)

                                                             CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                            <  1:1595244‑M1/91‑1 (MQ=255)

                                                               ggCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaattt                          <  1:2642633‑M2/91‑64 (MQ=255)

                                                               ggCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaattt                          <  1:2742975‑M2/91‑64 (MQ=255)

                                                               ggCGCGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaattt                          <  1:663824‑M2/91‑64 (MQ=255)

                                                               ggCGCGTCACCTTATGAAGGTATACGCAcctgtcttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaattt                          <  1:2743157‑M2/91‑64 (MQ=255)

                                                               GGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGt                          >  1:3478362‑M1/1‑91 (MQ=255)

                                                                gcgcGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaatttt                         <  1:884857‑M2/91‑65 (MQ=255)

                                                                gcgcGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaatttt                         <  1:1361590‑M2/91‑65 (MQ=255)

                                                                gcgcGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaatttt                         <  1:605376‑M2/91‑65 (MQ=255)

                                                                gcgcGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaatttt                         <  1:57233‑M2/91‑65 (MQ=255)

                                                                gcgcGTCACCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaatttt                         <  1:57121‑M2/91‑65 (MQ=255)

                                                                GCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGtt                         <  1:1248415‑M1/91‑1 (MQ=255)

                                                                    gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                     <  1:3096076/91‑1 (MQ=255)

                                                                    gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                     <  1:2193287/91‑1 (MQ=255)

                                                                    gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                     <  1:1618976/91‑1 (MQ=255)

                                                                     tCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCt                    <  1:2483537/91‑1 (MQ=255)

                                                                      cACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCtt                   <  1:4003874/91‑1 (MQ=255)

                                                                       aCCTTATGAAGGTATACGCAcctgttttttctttgctattgtattttgcagcatcattgatagttcgctctccccttaaattttgaatttt                  <  1:3342564‑M2/91‑72 (MQ=255)

                                                                        ccTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGt                 <  1:560246/91‑1 (MQ=255)

                                                                         cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                <  1:1456696/91‑1 (MQ=255)

                                                                          ttATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGttt               <  1:2023947/91‑1 (MQ=255)

                                                                          ttATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGttt               <  1:1131528/91‑1 (MQ=255)

                                                                           tATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTa              <  1:1576010/91‑1 (MQ=255)

                                                                           tATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTa              >  1:1300169/1‑91 (MQ=255)

                                                                               aaGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAAt          >  1:264504/1‑91 (MQ=255)

                                                                               aaGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAAt          <  1:1669889/91‑1 (MQ=255)

                                                                                aGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATc         >  1:3821085/1‑91 (MQ=255)

                                                                                aGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATc         >  1:3820742/1‑91 (MQ=255)

                                                                                aGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATc         >  1:3191143/1‑91 (MQ=255)

                                                                                aGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATc         >  1:1419521/1‑91 (MQ=255)

                                                                                   tataCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAg      >  1:355143/1‑91 (MQ=255)

                                                                                      aCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGtt   <  1:2704999/91‑1 (MQ=255)

                                                                                       cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt  >  1:2406981/1‑91 (MQ=255)

CAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTT  >  USA300TCH1516_ALE/221120‑221297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.