| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 303840 | 81 (0.820) | 9 (0.100) | 7/146 | NT | 10.8% | coding (630/1725 nt) | epsJ | putative glycosyltransferase EpsJ |
| ? | USA300TCH1516_ALE | = 303860 | 75 (0.840) | coding (650/1725 nt) | epsJ | putative glycosyltransferase EpsJ | |||||
AGATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/303744‑303840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtgaaACATACGCACTACTCATATGTTCACCTTCACGCTTTGTAGCATAATAATACGCTTTATCACTTAACACACTGATTCGATTTGCATT < USA300TCH1516_ALE/303860‑303775 AGATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAA < 1:1169933/91‑1AGATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAA < 1:1170149/91‑1 GATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAG < 1:705369/91‑1 ATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGG < 1:988863/91‑1 ATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGG < 1:1316402/91‑1 ATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGG < 1:3434796/91‑1 ATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGG < 1:105041/91‑1 CAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTG < 1:295867/91‑1 GCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAAACATACGCACTACTCA < 1:574364/91‑1 ATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAAACATACGCACTACTCATATG < 1:2340857/91‑1 ATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTG‑AACATACGCACTACTCATATGT < 1:2028191/91‑1 TTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAAACATACGCACTACTCATATGT < 1:266889/91‑1 TTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAAACATACGCACTACTCATATGTT < 1:2460963/91‑1 TTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAAACATACGCACTACTCATATGTT < 1:112405/91‑1 TAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTG‑AACATACGCACTACTCATATGTTCA < 1:2360653/91‑1 AATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAAACATACGCACTACTCATATGTTCAC < 1:113981/91‑1 AATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGTCTTCAGGTGAAACATACGCACTACTCATATGTTCACCTTCAC < 1:2278862/91‑1 AGGTGAAACATACGCACTACTCATATGTTCACCTTCACGCTTTGTAGCATAATAATACGCTTTATCACTTAACACACTGATTCGATTTGCA > 1:2872291/1‑91 GGTGAAACATACGCACTACTCATATGTTCACCTTCACGCTTTGTAGCATAATAATACGCTTTATCACTTAACACACTGATTCGATTTGCAT > 1:3066932/1‑91 GTGAAACATACGCACTACTCATATGTTCACCTTCACGCTTTGTAGCATAATAATACGCTTTATCACTTAACACACTGATTCGATTTGCATT < 1:2566010/91‑1 AGATCAATTATTTACAATGAAAGCATATTTAAATGCAAATCGAATCAGTGTGTTAAGTGATAAAGCGTATTATTATGCTACAAAGCGTGAAGGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/303744‑303840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtgaaACATACGCACTACTCATATGTTCACCTTCACGCTTTGTAGCATAATAATACGCTTTATCACTTAACACACTGATTCGATTTGCATT < USA300TCH1516_ALE/303860‑303775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |