| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 314329 | 69 (0.700) | 6 (0.070) | 6/148 | NT | 8.5% | intergenic (‑187/+64) | rebM/rbsK_rbiA | Demethylrebeccamycin‑D‑glucose O‑methyltransferase/Bifunctional ribokinase/ribose‑5‑phosphate isomerase A |
| ? | USA300TCH1516_ALE | = 314376 | 65 (0.710) | intergenic (‑234/+17) | rebM/rbsK_rbiA | Demethylrebeccamycin‑D‑glucose O‑methyltransferase/Bifunctional ribokinase/ribose‑5‑phosphate isomerase A | |||||
TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/314234‑314329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacagcTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAATA < USA300TCH1516_ALE/314376‑314287 TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC > 1:1224516/1‑91TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC < 1:1571077/91‑1TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC > 1:3702137/1‑91TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC > 1:3702075/1‑91TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC > 1:1822052/1‑91TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC > 1:3519830/1‑91TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGC > 1:2274387/1‑91 CACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCA < 1:2576808/91‑1 CACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCA < 1:775156/91‑1 CTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCACA > 1:1559709/1‑91 AATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATGAAGGTTTAGCATATAACAAGCAACATTCGTATATCA < 1:2767364/91‑1 ATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGC < 1:1064563/91‑1 TTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCT < 1:2217618/91‑1 TCTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGT < 1:3000636/91‑1 CTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTG < 1:2444529/91‑1 ATAGATGATGTTTTATAAAGATAAAAAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTT < 1:373487/91‑1 ACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGA > 1:98854/1‑91 CAGCTATGATATGGAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAA < 1:157334/91‑1 CAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAA < 1:157444/91‑1 CAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAA > 1:499486/1‑91 AGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAA > 1:1885153/1‑91 AGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAA < 1:3415128/91‑1 GCTATGATATGACGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAAT > 1:3174382/1‑91 GCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAAT < 1:1822347/91‑1 CTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAATA > 1:3534423/1‑91 TCACTTCATTTATAACTAAACATGAGTCAACAAGCATAGGTTTAGTGGAAAATTATTTCTAATAGATGATGTTTTATAAAGATAAAAAAGCACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/314234‑314329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacagcTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCTTTATAAAACATCATCTATTAGAAATA < USA300TCH1516_ALE/314376‑314287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |