| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 393589 = | 88 (0.890) | 5 (0.060) | 4/142 | NT | 6.8% | intergenic (+12/+48) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | 393631 = | 58 (0.660) | intergenic (+54/+6) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393687‑393589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAA > USA300TCH1516_ALE/393631‑393719 ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCCCAAACACTTACAAATTTAGTGTGCCG > 1:80865/1‑91 ATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAG > 1:1182956/1‑91 ATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAG > 1:3663880/1‑91 TGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGC < 1:3144778/91‑1 TGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGC < 1:2583545/91‑1 TGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGC > 1:1826112/1‑91 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG > 1:1948614/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 1:3017223/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 1:3928173/1‑91 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGATGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:1724081/91‑1 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGATGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:1724067/91‑1 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:2047002/91‑1 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC > 1:175117/1‑91 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC > 1:3918076/1‑91 TGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCT > 1:3065991/1‑91 GTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT > 1:1802561/1‑91 GAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGAT > 1:1336646/1‑91 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAG > 1:3966446/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 1:636985/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 1:604794/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCAT > 1:248373/1‑91 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC > 1:2787603/1‑91 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG < 1:263845/91‑1 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG < 1:263484/91‑1 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG > 1:775630/1‑91 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG > 1:775658/1‑91 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG > 1:775759/1‑91 CGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGT > 1:365705/1‑91 CGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGT > 1:2999427/1‑91 CGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGT > 1:2999557/1‑91 GTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTT < 1:2959696/91‑1 TCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTT > 1:700203/1‑91 CTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > 1:3656631/1‑91 CTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > 1:2933556/1‑91 TTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAA > 1:723634/1‑91 ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393687‑393589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAA > USA300TCH1516_ALE/393631‑393719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |