| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 512767 | 0 (0.000) | 9 (0.100) | 6/150 | NT | 100% | intergenic (+835/‑5928) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 512806 | NA (NA) | intergenic (+874/‑5889) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
AGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/512673‑512767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAAT < USA300TCH1516_ALE/512806‑512717 AGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTAT > 1:2198454/1‑91AGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACAATAAGTTACAAACATTATTTAGTATTTAT > 1:3321949/1‑91 GAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATG > 1:2959959/1‑91 GAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATG < 1:90603/91‑1 GAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATG < 1:352861/91‑1 GAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATG > 1:2959950/1‑91 AAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAG < 1:1343702/91‑1 AAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAG < 1:3229093/91‑1 AAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGC < 1:2805837/91‑1 TGTCAACGTTAATTCC‑AAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTA‑‑ATCAAACTCTCCATAAAAATTATGATGT < 1:1740696/91‑1 TCAACGTTAATTCC‑AAAAACGTAACTATTAGTTACAAACATTATTTAGTATTTATGAGCTA‑‑ATCAAACTCTCCATAAAAATTATGATGTTT < 1:4079583/91‑1 CAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTA‑‑ATCAAACTCTCCATAAAAATTATGATGTTT < 1:2365646/91‑1 CAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTA‑‑ATCAAACTCTCCATAAAAATTATGATGTTT < 1:2365657/91‑1 GTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACT < 1:3822666/91‑1 TAACTATAAGTTACAAACATTATTTAGTATTTATGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGTTCATAAATACTA < 1:3201991/91‑1 AACTATAAGTTACAAACATTATTTAGTATTTATGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAA < 1:510350/91‑1 ACTATAAGTTACAAACATTATTTAGTATTTATGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAA < 1:3269232/91‑1 TAAGTTACAAACATTATTTAGTATTTATGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAAT < 1:881150/91‑1 TGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTG < 1:1011785/91‑1 TGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTG < 1:1011771/91‑1 TGAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTG < 1:3937188/91‑1 GAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGG > 1:1153904/1‑91 GAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGG > 1:711879/1‑91 GAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGG > 1:711757/1‑91 GAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGG < 1:3365897/91‑1 GAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGG < 1:1428574/91‑1 GAGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGG < 1:3136847/91‑1 AGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGA < 1:1311584/91‑1 AGCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGA > 1:1317392/1‑91 GCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAA < 1:2753995/91‑1 GCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAA < 1:190571/91‑1 GCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAA > 1:50502/1‑91 GCCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAA < 1:2753972/91‑1 GCCAGGATCAAACGCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAA < 1:2753643/91‑1 CCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAAT < 1:3565725/91‑1 CCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAAT > 1:2286971/1‑91 CCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAAT < 1:3022194/91‑1 AGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/512673‑512767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcCAGGATCAAACTCTCCATAAAAATTATGATGTTTGATTAGCTCATAAATACTAAATAATGTTTGTAACTTATAGTTACGTTTTTTGGAAT < USA300TCH1516_ALE/512806‑512717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |