| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 512767 | 0 (0.000) | 9 (0.100) | 6/150 | NT | 100% | intergenic (+835/‑5928) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 512806 | NA (NA) | intergenic (+874/‑5889) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
AAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTAATCAAACATCATAATTTTTATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAACG > USA300TCH1516_ALE/512677‑512857 | aaaTGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGC < 1:2805837‑M1/91‑1 (MQ=255) aaTGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCt < 1:874396/91‑1 (MQ=31) aaTGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCt < 1:1650470/91‑1 (MQ=31) tGTCAACGTTAATTCC‑AAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCtaatcaaactctccataaaaattatgatgt < 1:1740696‑M1/91‑31 (MQ=255) tCAACGTTAATTCC‑AAAAACGTAACTATTAGTTACAAACATTATTTAGTATTTATGAGCtaatcaaactctccataaaaattatgatgttt < 1:4079583‑M1/91‑33 (MQ=255) cAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCtaatcaaactctccataaaaattatgatgttt < 1:2365646‑M1/91‑33 (MQ=255) cAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCtaatcaaactctccataaaaattatgatgttt < 1:2365657‑M1/91‑33 (MQ=255) gTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatact < 1:3822666‑M1/91‑53 (MQ=255) tAACTATAAGTTACAAACATTATTTAGTATTTATGAGCcaggatcaaactctccataaaaattatgatgtttgattagttcataaatacta < 1:3201991‑M1/91‑54 (MQ=255) aaCTATAAGTTACAAACATTATTTAGTATTTATGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaa < 1:510350‑M1/91‑55 (MQ=255) aCTATAAGTTACAAACATTATTTAGTATTTATGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaa < 1:3269232‑M1/91‑56 (MQ=255) taAGTTACAAACATTATTTAGTATTTATGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataat < 1:881150‑M1/91‑60 (MQ=255) tGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttg < 1:1011771‑M1/91‑87 (MQ=255) tGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttg < 1:1011785‑M1/91‑87 (MQ=255) tGAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttg < 1:3937188‑M1/91‑87 (MQ=255) gAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgg > 1:711879‑M1/1‑4 (MQ=255) gAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgg > 1:711757‑M1/1‑4 (MQ=255) gAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgg < 1:3136847‑M1/91‑88 (MQ=255) gAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgg > 1:1153904‑M1/1‑4 (MQ=255) gAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgg < 1:1428574‑M1/91‑88 (MQ=255) gAGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgg < 1:3365897‑M1/91‑88 (MQ=255) aGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgga > 1:1317392‑M1/1‑3 (MQ=255) aGCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttgga < 1:1311584‑M1/91‑89 (MQ=255) gCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaa < 1:2753972‑M1/91‑90 (MQ=255) gCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaa > 1:50502‑M1/1‑2 (MQ=255) gCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaa < 1:190571‑M1/91‑90 (MQ=255) gCcaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaa < 1:2753995‑M1/91‑90 (MQ=255) gCcaggatcaaacgctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaa < 1:2753643‑M1/91‑90 (MQ=255) ccaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaat < 1:3565725‑M1/91‑91 (MQ=255) ccaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaat < 1:3022194‑M1/91‑91 (MQ=255) ccaggatcaaactctccataaaaattatgatgtttgattagctcataaatactaaataatgtttgtaacttatagttacgttttttggaat > 1:2286971‑M1/1‑1 (MQ=255) | AAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTAATCAAACATCATAATTTTTATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAACG > USA300TCH1516_ALE/512677‑512857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |