| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 739800 | 78 (0.790) | 10 (0.120) | 10/134 | NT | 14.3% | intergenic (+27/+561) | pitA_1/sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
| ? | USA300TCH1516_ALE | = 739823 | 55 (0.670) | intergenic (+50/+538) | pitA_1/sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 | |||||
ACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/739699‑739800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactgaacttcaATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGC < USA300TCH1516_ALE/739823‑739735 ACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAA > 1:2476826/1‑91 CATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAA > 1:3685463/1‑91 ATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAAC > 1:605700/1‑91 ATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAAC < 1:3271624/91‑1 TGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT < 1:1075042/91‑1 TGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT < 1:2622051/91‑1 TGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT < 1:1950689/91‑1 TGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT < 1:1423392/91‑1 TGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT < 1:1074998/91‑1 TGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT > 1:1100437/1‑91 GGGTGATTACATTACCTATTTCAGCATTGTTAGAAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTG > 1:727023/1‑91 TGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAAC > 1:2754475/1‑91 GATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACT < 1:2875839/91‑1 TCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATG < 1:2797311/91‑1 ATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGT < 1:1344491/91‑1 GTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGAT < 1:1294255/91‑1 TAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATAC < 1:420561/91‑1 AGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACT < 1:2670188/91‑1 CAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGA < 1:2691903/91‑1 TTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTC < 1:1523706/91‑1 TCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAG < 1:1214306/91‑1 TATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTT < 1:2770594/91‑1 ATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTA < 1:2321514/91‑1 AAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAAT > 1:747342/1‑91 AAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAAT > 1:746301/1‑91 AAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAAT > 1:2187535/1‑91 ACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAG < 1:2363043/91‑1 TGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTA < 1:1342332/91‑1 TGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTA < 1:1097818/91‑1 ACTTCAGTACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAAC < 1:1455567/91‑1 ACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAAC > 1:2786058/1‑91 ACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAAC > 1:233372/1‑91 CTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACC > 1:1970488/1‑91 CTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACC > 1:1972793/1‑91 CTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACC > 1:982108/1‑91 TCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTG > 1:1396159/1‑91 CAATACCACCATTTGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGC > 1:3193975/1‑91 CAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGC > 1:687369/1‑91 CAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGC > 1:687370/1‑91 ACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/739699‑739800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactgaacttcaATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGC < USA300TCH1516_ALE/739823‑739735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |