| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 822743 | 69 (0.700) | 4 (0.040) | 4/146 | NT | 6.4% | coding (104/495 nt) | USA300HOU_RS04025 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 822770 | 54 (0.600) | coding (77/495 nt) | USA300HOU_RS04025 | hypothetical protein | |||||
ATTAAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/822647‑822743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacccaAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAGTTGGC < USA300TCH1516_ALE/822770‑822682 ATTAAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGG > 1:3652355/1‑91ATTAAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGG < 1:3361680/91‑1ATTAAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGG > 1:151584/1‑91ATTAAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGG < 1:3361079/91‑1 AAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCAC > 1:2096617/1‑91 GCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCC > 1:621973/1‑91 GCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCC > 1:4139713/1‑91 GCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCC > 1:4138988/1‑91 GCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCC > 1:1037420/1‑91 CCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA > 1:364523/1‑91 CCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA > 1:364608/1‑91 CCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA < 1:1281309/91‑1 AATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCAAACGCCTCTTAGTAGCATGTG < 1:1290384/91‑1 CGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCAAACGCCTCTTAGTAGCATGTGGATTTGT < 1:1016888/91‑1 GCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCAAACGCCTCTTAGTAGCATGTGGATTTGTG < 1:610380/91‑1 CCGTTAATTGGTAAATCGTCCAGGCAATGGCACCCAACCGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCA < 1:2041804/91‑1 GCACCCAAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAG > 1:3295923/1‑91 GCACCCAAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAG > 1:4096412/1‑91 CACCCAAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAGT > 1:1172453/1‑91 CAAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAGTTGGC > 1:2890227/1‑91 ATTAAGCCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/822647‑822743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacccaAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGGACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAGTTGGC < USA300TCH1516_ALE/822770‑822682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |