| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 822743 | 69 (0.700) | 4 (0.040) | 4/146 | NT | 6.4% | coding (104/495 nt) | USA300HOU_RS04025 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 822770 | 54 (0.600) | coding (77/495 nt) | USA300HOU_RS04025 | hypothetical protein | |||||
CCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATGAAATA > USA300TCH1516_ALE/822653‑822833 | ccTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA > 1:364608‑M1/1‑91 (MQ=255)ccTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA > 1:364523‑M1/1‑91 (MQ=255)ccTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCA < 1:1281309‑M1/91‑1 (MQ=255) cTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCcac < 1:967223/91‑1 (MQ=255) tAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCcaca < 1:586444/91‑1 (MQ=255) aaaaTTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACaa < 1:4059180/91‑1 (MQ=255) aTTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATc < 1:1650994/91‑1 (MQ=255) aTTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATc < 1:829679/91‑1 (MQ=255) ttAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATcc < 1:35963/91‑1 (MQ=255) tAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCca < 1:35612/91‑1 (MQ=255) tAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCca > 1:2786885/1‑91 (MQ=255) tAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCca < 1:35769/91‑1 (MQ=255) gCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACAt > 1:1029364/1‑91 (MQ=255) gCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACAt > 1:2189438/1‑91 (MQ=255) cTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATg < 1:2879038/91‑1 (MQ=255) cTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATg < 1:2878812/91‑1 (MQ=255) cTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATg > 1:1557992/1‑91 (MQ=255) tCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGct > 1:591731/1‑91 (MQ=255) tCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGct < 1:992126/91‑1 (MQ=255) ccAAAAATGAAGCGCCAACTTTTCCAAACACTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGctac < 1:770123/91‑1 (MQ=255) aaaaTGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTaa < 1:3991216/91‑1 (MQ=255) aaTGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCAaacgcctcttagtagcatgtg < 1:1290384‑M1/91‑22 (MQ=255) aaTGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAaga < 1:2113553/91‑1 (MQ=255) aTGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAagag < 1:1046340/91‑1 (MQ=255) aTGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAagag > 1:62838/1‑91 (MQ=255) gAAGCGCCAACTTTTCCAAACTCTAGATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGc < 1:3878914/91‑1 (MQ=255) aaGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCg > 1:80272/1‑91 (MQ=255) aGCGCCAACTTTTCCAAACTCTAGTTCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACAGGCTACTAAGAGGCGt < 1:3124974/91‑1 (MQ=255) aGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGt > 1:795435/1‑91 (MQ=255) aGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGt > 1:3884342/1‑91 (MQ=255) aGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGt < 1:149976/91‑1 (MQ=255) aGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGt > 1:1984243/1‑91 (MQ=255) aGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGt > 1:1626920/1‑91 (MQ=255) gcgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGtt < 1:1588473/91‑1 (MQ=255) gcgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGtt > 1:1901377/1‑91 (MQ=255) gcgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGtt < 1:3037152/91‑1 (MQ=255) gcgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGtt > 1:1059681/1‑91 (MQ=255) gcgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGtt < 1:2736977/91‑1 (MQ=255) gcgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGtt < 1:1803008/91‑1 (MQ=255) cgcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCAaacgcctcttagtagcatgtggatttgt < 1:1016888‑M1/91‑29 (MQ=255) gcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCAaacgcctcttagtagcatgtggatttgtg < 1:610380‑M1/91‑30 (MQ=255) gcCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTtg > 1:2890227‑M2/1‑89 (MQ=255) aCTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTtgggtg > 1:1172453‑M2/1‑85 (MQ=255) cTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTtgggtgc > 1:4096412‑M2/1‑84 (MQ=255) cTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTtgggtgc > 1:3295923‑M2/1‑84 (MQ=255) ccAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGa > 1:2806422/1‑91 (MQ=255) tctAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGa < 1:3191287/91‑1 (MQ=255) aaaTCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATag < 1:53206/91‑1 (MQ=255) aCCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGaaaa > 1:3717495/1‑91 (MQ=255) aCCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGaaaa < 1:2469809/91‑1 (MQ=255) ccGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAg < 1:351365/91‑1 (MQ=255) ccGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAg < 1:351591/91‑1 (MQ=255) ccGTTAATTGGTAAATCGTCCAGGCAATGGCACCCAaccgcctcttagtagcatgtggatttgtgggtgccattgcatggacgatttacca < 1:2041804‑M1/91‑56 (MQ=255) cGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGt < 1:1295831/91‑1 (MQ=255) cGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGt < 1:2205320/91‑1 (MQ=255) cGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGt > 1:2334092/1‑91 (MQ=255) cGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGt > 1:2334077/1‑91 (MQ=255) cGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAAGCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGt < 1:4055644/91‑1 (MQ=255) gTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTa > 1:2983752/1‑91 (MQ=255) ttAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTAc > 1:448868/1‑91 (MQ=255) ttAATTGGTAAATCGTCCATGCAATGGCACCCACAAAACCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTAc < 1:1300996/91‑1 (MQ=255) tGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTGCTGTTg > 1:1540896/1‑91 (MQ=255) tGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGGTtgggtgccattgcctggacgatttaccaattaacgg < 1:2041804‑M2/91‑37 (MQ=255) ggTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATCGAAAATGATAGAGAAAAGTACTGTTGa < 1:2543014/91‑1 (MQ=255) gTAAATCGTCCATGCAATGGCACCTACAAATCCACATGCTACTAAGAGGCGTTTAGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGat < 1:3025740/91‑1 (MQ=255) gTAAATCCTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGat < 1:2072440/91‑1 (MQ=255) aaaTCGTCCATGCAATGGCACCCACAAATCCACGTGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGatat < 1:3401392/91‑1 (MQ=255) aaaTCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGatat > 1:2876731/1‑91 (MQ=255) aaaTCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGatat > 1:2500770/1‑91 (MQ=255) aaTCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGAtata < 1:2533269/91‑1 (MQ=255) aaTCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGAtata < 1:2811528/91‑1 (MQ=255) tCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATaaa > 1:1568810/1‑91 (MQ=255) tCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATaaa > 1:1568799/1‑91 (MQ=255) gTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGc < 1:932611/91‑1 (MQ=255) gTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGc > 1:1932613/1‑91 (MQ=255) tCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCt < 1:2206157/91‑1 (MQ=255) cATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGa > 1:3885251/1‑91 (MQ=255) tGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTaaa < 1:2566635/91‑1 (MQ=255) tGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTaaa < 1:2566536/91‑1 (MQ=255) tGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTaaa < 1:3623729/91‑1 (MQ=255) ggCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTaaaa > 1:1912789/1‑91 (MQ=255) gCACCCAaacgcctcttagtagcatgtggatttgtgggtgccattgcatggacgatttaccaattaacggtagatttagagtttggaaaag > 1:4096412‑M1/1‑7 (MQ=255) gCACCCAaacgcctcttagtagcatgtggatttgtgggtgccattgcatggacgatttaccaattaacggtagatttagagtttggaaaag > 1:3295923‑M1/1‑7 (MQ=255) cACCCAaacgcctcttagtagcatgtggatttgtgggtgccattgcatggacgatttaccaattaacggtagatttagagtttggaaaagt > 1:1172453‑M1/1‑6 (MQ=255) cACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATg > 1:395185/1‑91 (MQ=255) cACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATg < 1:1833069/91‑1 (MQ=255) cACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATg < 1:1831191/91‑1 (MQ=255) cccACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATGaa > 1:2351347/1‑91 (MQ=255) cacaAATCCACATGCTACTAAGAGGCGTTtgggtgccattgcatggacgatttaccaattaacggtagatttagagtttggaaaagttggc < 1:610380‑M2/91‑63 (MQ=255) cAaacgcctcttagtagcatgtggatttgtgggtgccattgcatggacgatttaccaattaacggtagatttagagtttggaaaagttggc > 1:2890227‑M1/1‑2 (MQ=255) acaAATCCACATGCTACTAAGAGGCGTTtgggtgccattgcatggacgatttaccaattaacggtagatttagagtttggaaaagttggcg < 1:1016888‑M2/91‑64 (MQ=255) acaAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATGaaata < 1:3152981/91‑1 (MQ=255) | CCTAAAATTAAGCTTCCCAAAAATGAAGCGCCAACTTTTCCAAACTCTAAATCTACCGTTAATTGGTAAATCGTCCATGCAATGGCACCCACAAATCCACATGCTACTAAGAGGCGTTTGGGTGCATTGAAAATGATAGAGAAAAGTACTGTTGATATAAAGCTGATTGTAAAATGAAATA > USA300TCH1516_ALE/822653‑822833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |