BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1255833 =	96 (0.980)	8 (0.090)	4/138	NT	9.5%	intergenic (+49/+195)	rplS/USA300HOU_RS06250	50S ribosomal protein L19/hypothetical protein
*	?	USA300TCH1516_ALE	1255876 =	70 (0.830)	8 (0.090)	4/138	NT	9.5%	intergenic (+92/+152)	rplS/USA300HOU_RS06250	50S ribosomal protein L19/hypothetical protein

Only 100 of 131 total aligned reads displayed.

AGTTTACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCT  >  USA300TCH1516_ALE/1255743‑1255923

tgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaa                                                                                            <  1:532949‑M1/1‑1 (MQ=255)

aGTTTACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATa                                                                                            <  1:3261912/91‑1 (MQ=255)

 gtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaaa                                                                                           <  1:1045187‑M1/2‑1 (MQ=255)

 gtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaaa                                                                                           <  1:3899942‑M1/2‑1 (MQ=255)

  tttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaaaa                                                                                          <  1:3940066‑M1/3‑1 (MQ=255)

  tttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaaaa                                                                                          >  1:3993890‑M1/89‑91 (MQ=255)

  tttACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATaaa                                                                                          >  1:3070992/1‑91 (MQ=255)

  tttACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATaaa                                                                                          <  1:1046051/91‑1 (MQ=255)

   ttACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAg                                                                                         >  1:755196/1‑91 (MQ=255)

    tatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGc                                                                                        >  1:3093364‑M1/87‑91 (MQ=255)

    tACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGc                                                                                        <  1:1122602/91‑1 (MQ=255)

     atataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGcc                                                                                       <  1:11848‑M1/6‑1 (MQ=255)

     aCGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGcc                                                                                       >  1:213330/1‑91 (MQ=255)

      tataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcataaAAAGCCa                                                                                      >  1:2088284‑M1/85‑91 (MQ=255)

      tataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCa                                                                                      >  1:4031455‑M1/85‑91 (MQ=255)

        taaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATc                                                                                    <  1:2646231‑M1/9‑1 (MQ=255)

         ggTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCt                                                                                   >  1:893026/1‑91 (MQ=255)

         aaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATCt                                                                                   >  1:2432365‑M1/82‑91 (MQ=255)

          gTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTa                                                                                  >  1:148406/1‑91 (MQ=255)

            aaaGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAgg                                                                                >  1:2492679/1‑91 (MQ=255)

             aaGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGt                                                                               <  1:1814707/91‑1 (MQ=255)

             aaGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGt                                                                               <  1:1814494/91‑1 (MQ=255)

              aGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTc                                                                              <  1:1537981/91‑1 (MQ=255)

               gctgctAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCa                                                                             <  1:957303/91‑1 (MQ=255)

               gctgctAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCa                                                                             >  1:706460/1‑91 (MQ=255)

                ctgctAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCAc                                                                            >  1:3123549/1‑91 (MQ=255)

                ctgctAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCAc                                                                            >  1:441501/1‑91 (MQ=255)

                  gctAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACtt                                                                          <  1:3929862/91‑1 (MQ=255)

                     aGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTa                                                                       <  1:3696788/91‑1 (MQ=255)

                       aaTCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATg                                                                     <  1:2466633/91‑1 (MQ=255)

                        aTCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATgg                                                                    >  1:3431646/1‑91 (MQ=255)

                          ccAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAg                                                                  <  1:2880269/91‑1 (MQ=255)

                           cAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGt                                                                 >  1:1242999/1‑91 (MQ=255)

                            aaGTAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTg                                                                <  1:3345580/91‑1 (MQ=255)

                            aaGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTg                                                                <  1:3008383/91‑1 (MQ=255)

                              gAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGat                                                              >  1:1371552/1‑91 (MQ=255)

                              gAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGat                                                              >  1:3604164/1‑91 (MQ=255)

                              gAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGat                                                              >  1:3604719/1‑91 (MQ=255)

                              gAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATCAGTCAAATCCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGat                                                              >  1:3307295/1‑91 (MQ=255)

                               aaaTTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGata                                                             <  1:867542/91‑1 (MQ=255)

                                   tCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGa                                                         >  1:2021076/1‑91 (MQ=255)

                                   tCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGa                                                         >  1:2020613/1‑91 (MQ=255)

                                    tagagaaggaataaacaattacattatcaactttacattaactagacagcaaatAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGAt                                                        >  1:3302343‑M1/55‑91 (MQ=255)

                                    tagagaaggaataaacaattacattatcaactttacattaactagacagcaaacAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGAt                                                        >  1:3302290‑M1/55‑91 (MQ=255)

                                    cGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGAt                                                        >  1:2631372/1‑91 (MQ=255)

                                     gTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATg                                                       >  1:401168/1‑91 (MQ=255)

                                     gTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATg                                                       >  1:2320800/1‑91 (MQ=255)

                                     agagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATg                                                       >  1:1323845‑M1/54‑91 (MQ=255)

                                     agagaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATg                                                       >  1:1323125‑M1/54‑91 (MQ=255)

                                      ttAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATgg                                                      >  1:3477165/1‑91 (MQ=255)

                                      ttAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATgg                                                      >  1:2565992/1‑91 (MQ=255)

                                      ttAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATgg                                                      <  1:302770/91‑1 (MQ=255)

                                      ttAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATgg                                                      <  1:2327877/91‑1 (MQ=255)

                                       tAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGc                                                     <  1:2549496/91‑1 (MQ=255)

                                       tAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGc                                                     <  1:108199/91‑1 (MQ=255)

                                       tAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGc                                                     >  1:1822703/1‑91 (MQ=255)

                                       agaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGc                                                     >  1:1503440‑M1/52‑91 (MQ=255)

                                       agaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGc                                                     >  1:1503566‑M1/52‑91 (MQ=255)

                                        gaaggaataaacaattacattatcaactttacattaactaaacagcaaaaAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCt                                                    >  1:2030097‑M1/51‑91 (MQ=255)

                                           cAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttt                                                 <  1:3020444/91‑1 (MQ=255)

                                            aGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCttttt                                                >  1:4125074/1‑91 (MQ=255)

                                            aGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCttttt                                                <  1:2296503/91‑1 (MQ=255)

                                             gCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttttt                                               >  1:1044196/1‑91 (MQ=255)

                                              cATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGttttaatt                                              >  1:2075882/1‑87 (MQ=255)

                                                tttAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGc                                            <  1:2849458/91‑1 (MQ=255)

                                                 ttAAGCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCt                                           >  1:3277181/1‑91 (MQ=255)

                                                   aaaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGt                                         <  1:3117354/91‑1 (MQ=255)

                                                   aaaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGt                                         <  1:3116886/91‑1 (MQ=255)

                                                      cAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTa                                      <  1:578970/91‑1 (MQ=255)

                                                       aaaGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAg                                     >  1:3080657/1‑91 (MQ=255)

                                                         aGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGtt                                   >  1:3584632/1‑91 (MQ=255)

                                                         aGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGtt                                   <  1:1678460/91‑1 (MQ=255)

                                                           cTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTaa                                 <  1:1197344/91‑1 (MQ=255)

                                                             atgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGTTGTTTAGTTAATg                               >  1:167155/1‑91 (MQ=255)

                                                             atgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATg                               >  1:1012887/1‑91 (MQ=255)

                                                             atgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTCTAGTTAATg                               >  1:3965943/1‑91 (MQ=255)

                                                              tgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGt                              <  1:1099682/91‑1 (MQ=255)

                                                                 ttgAGTCGAATTTGACTCATACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaaa                           >  1:2056763/2‑91 (MQ=255)

                                                                  tgAGTCGAATTTGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAg                          >  1:670953/1‑91 (MQ=255)

                                                                    aGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGtt                        >  1:521958/1‑91 (MQ=255)

                                                                     gTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTg                       <  1:3498152/91‑1 (MQ=255)

                                                                       cAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGAt                     <  1:3059567/91‑1 (MQ=255)

                                                                        aaaTTCGACTCAAACAATAAAGCCATCTAGGGCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATa                    >  1:638164/1‑91 (MQ=255)

                                                                          aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                  >  1:2782438/1‑91 (MQ=255)

                                                                            ttgACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGt                >  1:1451417/3‑91 (MQ=255)

                                                                             cGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTa               >  1:3938981/1‑91 (MQ=255)

                                                                             cGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTa               <  1:1678339/91‑1 (MQ=255)

                                                                               aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAt             >  1:1574728/1‑91 (MQ=255)

                                                                               aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAt             <  1:2828564/91‑1 (MQ=255)

                                                                               aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCATTTTTTGCTGTTTAGTTAATGTAAAGTTGATAACGTAAt             >  1:3852990/1‑91 (MQ=255)

                                                                                cTCAAACAAGAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAtt            <  1:3964841/91‑1 (MQ=255)

                                                                                  cAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGt          <  1:1633988/91‑1 (MQ=255)

                                                                                    aaCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGttt        <  1:31379/91‑1 (MQ=255)

                                                                                    aaCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGttt        <  1:3809666/91‑1 (MQ=255)

                                                                                     aCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTa       >  1:3356028/1‑91 (MQ=255)

                                                                                      cAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTAt      <  1:2549472/91‑1 (MQ=255)

                                                                                       aaTAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTAtt     >  1:3772573/1‑91 (MQ=255)

                                                                                         tAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTcc   <  1:606826/91‑1 (MQ=255)

                                                                                         tAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTcc   <  1:2736014/91‑1 (MQ=255)

                                                                                          AAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCt  >  1:3381542‑M1/1‑91 (MQ=255)

AGTTTACGTGGTAAAGCTGCTAGAATCCAAGAAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCT  >  USA300TCH1516_ALE/1255743‑1255923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.