BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1255833 =	96 (0.980)	8 (0.090)	4/138	NT	9.5%	intergenic (+49/+195)	rplS/USA300HOU_RS06250	50S ribosomal protein L19/hypothetical protein
*	?	USA300TCH1516_ALE	1255876 =	70 (0.830)	8 (0.090)	4/138	NT	9.5%	intergenic (+92/+152)	rplS/USA300HOU_RS06250	50S ribosomal protein L19/hypothetical protein

Only 100 of 123 total aligned reads displayed.

CAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACA  >  USA300TCH1516_ALE/1255786‑1255965

cAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttt                                                                                           <  1:3020444/91‑1 (MQ=255)

 aGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCttttt                                                                                          >  1:4125074/1‑91 (MQ=255)

 aGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCttttt                                                                                          <  1:2296503/91‑1 (MQ=255)

 aGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCttttt                                                                                          <  1:1395328/91‑1 (MQ=255)

  gCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttttt                                                                                         >  1:1044196/1‑91 (MQ=255)

   cATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCttttttt                                                                                        >  1:3129492/1‑91 (MQ=255)

   cATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGAttttttt                                                                                        >  1:2075273/1‑91 (MQ=255)

     tttAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGc                                                                                      <  1:2849458/91‑1 (MQ=255)

      ttAAGCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCt                                                                                     >  1:3277181/1‑91 (MQ=255)

        aaaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGt                                                                                   <  1:3117354/91‑1 (MQ=255)

        aaaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGt                                                                                   <  1:3116886/91‑1 (MQ=255)

          aCAAAGCTATGTATGAGTCAAATTCGACACAAACAATAAAGCCATCTAGGTCTCTTTTCTGGAGTGATATAGATGGCTTTTTTTGCTGttt                                                                                 >  1:1642349/1‑91 (MQ=255)

           cAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTa                                                                                <  1:578970/91‑1 (MQ=255)

            aaaGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAg                                                                               >  1:3080657/1‑91 (MQ=255)

             aaGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGt                                                                              >  1:386429/1‑91 (MQ=255)

              aGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGtt                                                                             <  1:1678460/91‑1 (MQ=255)

                cTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTaa                                                                           <  1:1197344/91‑1 (MQ=255)

                  atgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGTTGTTTAGTTAATg                                                                         >  1:167155/1‑91 (MQ=255)

                  atgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATg                                                                         >  1:1012887/1‑91 (MQ=255)

                  atgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTCTAGTTAATg                                                                         >  1:3965943/1‑91 (MQ=255)

                   tgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGt                                                                        <  1:1051853/91‑1 (MQ=255)

                   tgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGt                                                                        <  1:1099682/91‑1 (MQ=255)

                     tttgAGTCGAATTTGACTCATACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaa                                                                      >  1:5589/3‑91 (MQ=38)

                      ttgAGTCGAATTTGACTCATACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaaa                                                                     >  1:2056763/2‑91 (MQ=255)

                       tgAGTCGAATTTGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAg                                                                    >  1:670953/1‑91 (MQ=255)

                        gAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGt                                                                   <  1:3396707/91‑1 (MQ=255)

                         aGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGtt                                                                  >  1:521958/1‑91 (MQ=255)

                          gTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTg                                                                 <  1:3498152/91‑1 (MQ=255)

                            cAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGAt                                                               <  1:3059567/91‑1 (MQ=255)

                             gaaTTTGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTCAAGTTGATa                                                              >  1:3972211/2‑91 (MQ=255)

                             aaaTTCGACTCAAACAATAAAGCCATCTAGGGCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATa                                                              >  1:638164/1‑91 (MQ=255)

                              aaTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATaa                                                             <  1:2953941/91‑1 (MQ=255)

                               aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                                                            >  1:2782438/1‑91 (MQ=255)

                               aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                                                            <  1:3300844/91‑1 (MQ=255)

                                ttCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATg                                                           <  1:797502/91‑1 (MQ=255)

                                  cGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTa                                                         >  1:3938981/1‑91 (MQ=255)

                                  cGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTa                                                         >  1:638194/1‑91 (MQ=255)

                                    aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAt                                                       >  1:3318381/1‑91 (MQ=255)

                                    aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAt                                                       >  1:1531591/1‑91 (MQ=255)

                                    aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCATTTTTTGCTGTTTAGTTAATGTAAAGTTGATAACGTAAt                                                       >  1:3852990/1‑91 (MQ=255)

                                     cTCAAACAAGAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAtt                                                      <  1:3964841/91‑1 (MQ=255)

                                       cAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGt                                                    <  1:1633988/91‑1 (MQ=255)

                                         aaCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGttt                                                  <  1:31379/91‑1 (MQ=255)

                                            aaTAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTAtt                                               >  1:3771283/1‑91 (MQ=255)

                                            aaTAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTAtt                                               >  1:3772573/1‑91 (MQ=255)

                                              tAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTcc                                             <  1:2736014/91‑1 (MQ=255)

                                              tAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTcc                                             <  1:606826/91‑1 (MQ=255)

                                               AAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCt                                            >  1:3381542‑M1/1‑91 (MQ=255)

                                                AAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCtt                                           <  1:1368181‑M1/91‑1 (MQ=255)

                                                 AGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtc                                          <  1:1373312‑M1/91‑1 (MQ=255)

                                                  gccatctatatcactccataaaagtgacctagatggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtct                                         >  1:1503440‑M2/41‑91 (MQ=255)

                                                  gccatctatatcactccataaaagtgacctagatggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtct                                         >  1:1503566‑M2/41‑91 (MQ=255)

                                                  GCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtct                                         <  1:322067‑M1/91‑1 (MQ=255)

                                                  GCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtct                                         <  1:1746036‑M1/91‑1 (MQ=255)

                                                  GCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTT‑GCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtctc                                        <  1:3372960‑M1/91‑1 (MQ=255)

                                                   CCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtctc                                        <  1:936645‑M1/91‑1 (MQ=255)

                                                   CCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGGTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtctc                                        <  1:630820‑M1/91‑1 (MQ=255)

                                                    catctatatcactccataaaagtgacctagatggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTctct                                       >  1:1323125‑M2/39‑91 (MQ=255)

                                                     atctatatcactccataaaagtgacctagatggctttGTTTGCTGTCTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTa                                      >  1:3302290‑M2/38‑91 (MQ=255)

                                                     atctatatcactccataaaagtgacctagatggctttATTTGCTGTCTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTa                                      >  1:3302343‑M2/38‑91 (MQ=255)

                                                     ATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTa                                      <  1:546350‑M1/91‑1 (MQ=255)

                                                     ATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTa                                      <  1:546922‑M1/91‑1 (MQ=255)

                                                     ATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTa                                      <  1:3720698‑M1/91‑1 (MQ=255)

                                                      TCTATGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTAt                                     >  1:3454957‑M1/1‑91 (MQ=255)

                                                      TCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTAt                                     >  1:4069389‑M1/1‑91 (MQ=255)

                                                        TAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTc                                   <  1:1644136‑M1/91‑1 (MQ=255)

                                                         AGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCa                                  >  1:825827‑M1/1‑91 (MQ=255)

                                                              aCTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACg                             >  1:2714789/1‑91 (MQ=255)

                                                              aCTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACg                             >  1:1741621/1‑91 (MQ=255)

                                                               cTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACgt                            >  1:21931/1‑91 (MQ=255)

                                                                ttttATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACgtg                           >  1:2414847/1‑91 (MQ=255)

                                                                   tATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGttt                        <  1:2260307/91‑1 (MQ=255)

                                                                    aTGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTg                       >  1:1547060/1‑91 (MQ=255)

                                                                    aTGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTg                       <  1:2770293/91‑1 (MQ=255)

                                                                    aTGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTg                       >  1:1336259/1‑91 (MQ=255)

                                                                     tGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGc                      <  1:4001821/91‑1 (MQ=255)

                                                                     tGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGGTTGc                      <  1:3273811/91‑1 (MQ=255)

                                                                     tGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGCTTGc                      <  1:3273809/91‑1 (MQ=255)

                                                                      ggAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCt                     >  1:4026324/1‑91 (MQ=255)

                                                                      ggAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCt                     >  1:286738/1‑91 (MQ=255)

                                                                      ggAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCt                     >  1:3794257/1‑91 (MQ=255)

                                                                       gAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATGACGTGTTTGCTc                    <  1:3174309/91‑1 (MQ=255)

                                                                       gAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTc                    <  1:432195/91‑1 (MQ=255)

                                                                         gTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCaa                  <  1:3041376/91‑1 (MQ=255)

                                                                         gTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCaa                  >  1:1423677/1‑91 (MQ=255)

                                                                            atatAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAAt               <  1:1937071/91‑1 (MQ=255)

                                                                              ataGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATgg             <  1:869449/91‑1 (MQ=255)

                                                                                agatggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGtt           >  1:2432365‑M2/11‑91 (MQ=255)

                                                                                 gatggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTta          <  1:2646231‑M2/82‑1 (MQ=255)

                                                                                   tggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTtata        <  1:1904724‑M2/84‑1 (MQ=255)

                                                                                   tggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTtata        >  1:4031455‑M2/8‑91 (MQ=255)

                                                                                   tggctttTTATGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTtata        >  1:2088284‑M2/8‑91 (MQ=255)

                                                                                    ggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTtatat       <  1:11596‑M2/85‑1 (MQ=255)

                                                                                    ggctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTtatat       <  1:11848‑M2/85‑1 (MQ=255)

                                                                                     gctttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTtatata      >  1:3092653‑M2/6‑91 (MQ=255)

                                                                                       tttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATaaa    <  1:3940066‑M2/88‑1 (MQ=255)

                                                                                       tttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATaaa    >  1:3993890‑M2/4‑91 (MQ=255)

                                                                                        ttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAAc   <  1:3899942‑M2/89‑1 (MQ=255)

                                                                                        ttTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAAc   <  1:1045187‑M2/89‑1 (MQ=255)

                                                                                         tTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACa  <  1:532949‑M2/90‑1 (MQ=255)

CAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACA  >  USA300TCH1516_ALE/1255786‑1255965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.