BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1366496	118 (1.200)	8 (0.090)	6/152	NT	6.4%	intergenic (+72/‑85)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase
*	?	USA300TCH1516_ALE	= 1366530	122 (1.310)	8 (0.090)	6/152	NT	6.4%	intergenic (+106/‑51)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase

Only 100 of 149 total aligned reads displayed.

TAAAAAATCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAA  >  USA300TCH1516_ALE/1366406‑1366585

tAAAAAATCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAAC                                                                                            >  1:51216‑M1/1‑91 (MQ=255)

   aaaaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGa                                                                                         <  1:3298080/91‑1 (MQ=255)

    aaaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGaa                                                                                        >  1:4098962/1‑91 (MQ=255)

    aaaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGaa                                                                                        <  1:3025136/91‑1 (MQ=255)

     aaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAAt                                                                                       <  1:1066690/91‑1 (MQ=255)

     aaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAAt                                                                                       >  1:833150/1‑91 (MQ=255)

       tCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGt                                                                                     <  1:2385746/91‑1 (MQ=255)

        cAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtt                                                                                    <  1:2430387/91‑1 (MQ=255)

          aGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtttt                                                                                  <  1:753037/91‑1 (MQ=255)

          aGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtttt                                                                                  >  1:3903497/1‑91 (MQ=255)

          aGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtttt                                                                                  >  1:3067236/1‑91 (MQ=255)

           gTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTtc                                                                                 <  1:2293429/91‑1 (MQ=255)

            ttGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTtct                                                                                >  1:155388/1‑91 (MQ=255)

              ggTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATGAACTGAATGTTTTCTCa                                                                              >  1:3557107/1‑91 (MQ=255)

               gTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCat                                                                             <  1:3535070/91‑1 (MQ=255)

                 aaaaTCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCatat                                                                           >  1:481289/1‑91 (MQ=255)

                 aaaaTCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCatat                                                                           <  1:2983968/91‑1 (MQ=255)

                 aaaaTCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCatat                                                                           <  1:2983711/91‑1 (MQ=255)

                 aaaaTCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTGTTCTCctat                                                                           >  1:3728305/1‑91 (MQ=255)

                     tCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATtaat                                                                       >  1:3612166/1‑91 (MQ=255)

                       aaaTTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATtaataa                                                                     <  1:1776202/91‑1 (MQ=255)

                        aaTTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAGTAAg                                                                    >  1:3462213/1‑91 (MQ=255)

                         atgtCGTACTTTAGCCCATTTACAATATCAATAAAACAATGGACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAgg                                                                   <  1:1559069/88‑1 (MQ=255)

                           ttCGTACTTTAGCCCATTTACAATATCAATAACACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGTaa                                                                 >  1:2731175/1‑91 (MQ=255)

                           ttCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaa                                                                 >  1:2304542/1‑91 (MQ=255)

                           ttCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaa                                                                 >  1:2731201/1‑91 (MQ=255)

                            tcgcaCTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaaa                                                                <  1:606875/87‑1 (MQ=255)

                               tACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACAt                                                             >  1:1006613/1‑91 (MQ=255)

                                aCTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACtgaatgtttccttattaatatgagaaaacatt                                                            <  1:3747826‑M1/91‑33 (MQ=255)

                                aCTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACcgaatgtttccttattaatatgagaaaacatt                                                            <  1:64877‑M1/91‑33 (MQ=255)

                                aCTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACAtt                                                            >  1:2049619/1‑91 (MQ=255)

                                 cTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTc                                                           <  1:605421/91‑1 (MQ=255)

                                  tttAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACtgaatgtttccttattaatatgagaaaacattca                                                          <  1:3926829‑M1/91‑35 (MQ=255)

                                   ttAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGg                                                         <  1:1353450‑M2/91‑2 (MQ=255)

                                    tAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACcgaatgtttccttattaatatgagaaaacattcagt                                                        <  1:2232514‑M1/91‑37 (MQ=255)

                                       cccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGtttt                                                     <  1:987434/91‑1 (MQ=255)

                                        ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACcgaatgtttccttattaatatgagaaaacattcagtttat                                                    <  1:3580384‑M1/91‑41 (MQ=255)

                                        ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                    >  1:1003108/1‑91 (MQ=255)

                                        ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                    >  1:1003087/1‑91 (MQ=255)

                                           tttACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATGAATAAGGAAACATTCGGTTTTTAAt                                                 >  1:3853838/1‑91 (MQ=255)

                                               cAATATCAATAAAACAATGTACAGTCTATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                             <  1:3866696/91‑1 (MQ=255)

                                               cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                             >  1:3721390/1‑91 (MQ=255)

                                               cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                             >  1:2817807/1‑91 (MQ=255)

                                                 atatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAt                                           >  1:3681442/1‑91 (MQ=255)

                                                  tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                          >  1:1526315/1‑91 (MQ=255)

                                                  tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                          >  1:2497015/1‑91 (MQ=255)

                                                   atCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAttt                                         <  1:2706214/91‑1 (MQ=255)

                                                    tCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTa                                        <  1:952496/91‑1 (MQ=255)

                                                      aaTAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTaaa                                      <  1:1983299/91‑1 (MQ=255)

                                                       aTAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTaaaa                                     <  1:393735/91‑1 (MQ=255)

                                                        tAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTaaaaa                                    >  1:3748014/1‑91 (MQ=255)

                                                         aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                  >  1:3062626/1‑91 (MQ=255)

                                                         aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                  >  1:3062584/1‑91 (MQ=255)

                                                         aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                  >  1:2253460/1‑91 (MQ=255)

                                                         aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                  >  1:2254063/1‑91 (MQ=255)

                                                          aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                 <  1:2004824/91‑1 (MQ=255)

                                                          aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                 <  1:2485348/91‑1 (MQ=255)

                                                          aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                 <  1:3384559/91‑1 (MQ=255)

                                                           aaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑taa                                >  1:1177451/1‑91 (MQ=255)

                                                              aaTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTa                             >  1:143820/1‑91 (MQ=255)

                                                               aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAg                            >  1:1109091/1‑91 (MQ=255)

                                                                 gTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGtt                          <  1:1068946/91‑1 (MQ=255)

                                                                   aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAAATAGtttt                        >  1:817376/1‑91 (MQ=255)

                                                                   aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAAATAGtttt                        >  1:817031/1‑91 (MQ=255)

                                                                    cAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGttttt                       <  1:1150677/91‑1 (MQ=255)

                                                                     aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTa                      >  1:2634524/1‑91 (MQ=255)

                                                                     aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTa                      <  1:1899447/91‑1 (MQ=255)

                                                                     aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTa                      >  1:2279320/1‑91 (MQ=255)

                                                                       tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAACTAATTA‑TTTTTaaa                    <  1:2271440/91‑1 (MQ=255)

                                                                       tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTaaa                    <  1:2166480/91‑1 (MQ=255)

                                                                         tataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgg                  <  1:3339866/91‑1 (MQ=255)

                                                                          ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                 <  1:417122/91‑1 (MQ=255)

                                                                          ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                 <  1:3360131/91‑1 (MQ=255)

                                                                          ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                 <  1:3359620/91‑1 (MQ=255)

                                                                          ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                 <  1:3359485/91‑1 (MQ=255)

                                                                          ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                 <  1:2859733/91‑1 (MQ=255)

                                                                           taCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgggg                <  1:856969/91‑1 (MQ=255)

                                                                            aCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGc               <  1:3817073/91‑1 (MQ=255)

                                                                               aaTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAt            >  1:118649/1‑91 (MQ=255)

                                                                                aTGCTATAATCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt           <  1:3972502/91‑1 (MQ=255)

                                                                                aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt           <  1:169460/91‑1 (MQ=255)

                                                                                aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt           >  1:3467860/1‑91 (MQ=255)

                                                                                aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt           >  1:1352169/1‑91 (MQ=255)

                                                                                 tGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAttt          >  1:1326387/1‑91 (MQ=255)

                                                                                  gCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTa         <  1:1879807/91‑1 (MQ=255)

                                                                                   cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa        >  1:1328894/1‑91 (MQ=255)

                                                                                   cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa        >  1:2284621/1‑91 (MQ=255)

                                                                                   cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa        <  1:1945807/91‑1 (MQ=255)

                                                                                   cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa        >  1:2284530/1‑91 (MQ=255)

                                                                                     ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAg      >  1:3540534/1‑91 (MQ=255)

                                                                                     ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAg      >  1:674590/1‑91 (MQ=255)

                                                                                       aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggc     <  1:133488‑M2/91‑54 (MQ=255)

                                                                                       aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTg    <  1:3828818/91‑1 (MQ=255)

                                                                                       aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTg    <  1:1503700/91‑1 (MQ=255)

                                                                                        aaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGa   >  1:2117948/1‑91 (MQ=255)

                                                                                         aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggcta   <  1:2232512‑M2/91‑56 (MQ=255)

                                                                                         aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa  <  1:726656/91‑1 (MQ=255)

                                                                                         aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa  >  1:2853385/1‑91 (MQ=255)

                                                                                         aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa  <  1:2554729/91‑1 (MQ=255)

                                                                                         aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa  <  1:2553914/91‑1 (MQ=255)

TAAAAAATCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAA  >  USA300TCH1516_ALE/1366406‑1366585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.