BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1366496	118 (1.200)	8 (0.090)	6/152	NT	6.4%	intergenic (+72/‑85)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase
*	?	USA300TCH1516_ALE	= 1366530	122 (1.310)	8 (0.090)	6/152	NT	6.4%	intergenic (+106/‑51)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase

Only 100 of 149 total aligned reads displayed.

TTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCTA  >  USA300TCH1516_ALE/1366440‑1366620

tttAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCg                                                                                             <  1:1026616/91‑1 (MQ=255)

 ttAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGg                                                                                            <  1:1353450‑M2/91‑2 (MQ=255)

      ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                                                       >  1:1003108/1‑91 (MQ=255)

      ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                                                       >  1:1003087/1‑91 (MQ=255)

       cATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATGTTAATAAGGAAACATTCGGTTTTTa                                                                                      >  1:3852944/1‑91 (MQ=255)

             cAATATCAATAAAACAATGTACAGTCTATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                                <  1:3866696/91‑1 (MQ=255)

             cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                                >  1:3721390/1‑91 (MQ=255)

             cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                                >  1:2817807/1‑91 (MQ=255)

             cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                                <  1:2333961/91‑1 (MQ=255)

              aaTATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCa                                                                               <  1:2547347/91‑1 (MQ=255)

              aaTATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCa                                                                               >  1:2933581/1‑91 (MQ=255)

               atatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAt                                                                              >  1:3681442/1‑91 (MQ=255)

                tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                                                             >  1:2497015/1‑91 (MQ=255)

                tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                                                             >  1:1526315/1‑91 (MQ=255)

                 atCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAttt                                                                            <  1:2706214/91‑1 (MQ=255)

                  tCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTa                                                                           <  1:952496/91‑1 (MQ=255)

                     aTAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTaaaa                                                                        <  1:393735/91‑1 (MQ=255)

                      tAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTaaaaa                                                                       >  1:3748014/1‑91 (MQ=255)

                       aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                                                     <  1:2717505/91‑1 (MQ=255)

                       aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                                                     >  1:3062584/1‑91 (MQ=255)

                       aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                                                     >  1:3062599/1‑91 (MQ=255)

                       aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                                                     >  1:2254063/1‑91 (MQ=255)

                       aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                                                     >  1:2253460/1‑91 (MQ=255)

                        aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                                                    <  1:99002/91‑1 (MQ=255)

                        aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                                                    <  1:2004824/91‑1 (MQ=255)

                        aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                                                    <  1:3384559/91‑1 (MQ=255)

                         aaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑taa                                                                   >  1:1177451/1‑91 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAg                                                               >  1:756888/1‑91 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAg                                                               >  1:1109091/1‑91 (MQ=255)

                              tGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGt                                                              >  1:1944000/1‑91 (MQ=255)

                                tACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGttt                                                            <  1:3544081/91‑1 (MQ=255)

                                 aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAAATAGtttt                                                           >  1:817376/1‑91 (MQ=255)

                                 aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAAATAGtttt                                                           >  1:817031/1‑91 (MQ=255)

                                  cAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGttttt                                                          <  1:1150677/91‑1 (MQ=255)

                                   aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTa                                                         >  1:2634524/1‑91 (MQ=255)

                                   aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTa                                                         >  1:2279320/1‑91 (MQ=255)

                                     tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAACTAATTA‑TTTTTaaa                                                       <  1:2271440/91‑1 (MQ=255)

                                     tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTaaa                                                       >  1:3885537/1‑91 (MQ=255)

                                     tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTaaa                                                       <  1:2166480/91‑1 (MQ=255)

                                     tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTaaa                                                       >  1:1793014/1‑91 (MQ=255)

                                       tataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgg                                                     <  1:3339866/91‑1 (MQ=255)

                                        ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                                                    <  1:2859733/91‑1 (MQ=255)

                                        ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                                                    <  1:3359485/91‑1 (MQ=255)

                                        ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                                                    <  1:417122/91‑1 (MQ=255)

                                        ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                                                    <  1:3359620/91‑1 (MQ=255)

                                        ataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAggg                                                    <  1:3360131/91‑1 (MQ=255)

                                         taCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgggg                                                   <  1:198382/91‑1 (MQ=255)

                                         taCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgggg                                                   >  1:3015233/1‑91 (MQ=255)

                                         taCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgggg                                                   <  1:856969/91‑1 (MQ=255)

                                            gAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTa                                                >  1:473947/1‑91 (MQ=255)

                                             aaTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAt                                               >  1:118649/1‑91 (MQ=255)

                                              aTGCTATAATCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt                                              <  1:3972502/91‑1 (MQ=255)

                                              aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt                                              >  1:3467860/1‑91 (MQ=255)

                                              aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt                                              <  1:169460/91‑1 (MQ=255)

                                              aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt                                              >  1:1352169/1‑91 (MQ=255)

                                               tGCTATAAAGTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAttt                                             <  1:3977468/91‑1 (MQ=255)

                                               tGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAttt                                             >  1:1326387/1‑91 (MQ=255)

                                                gCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTa                                            <  1:1879807/91‑1 (MQ=255)

                                                 cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa                                           >  1:1328894/1‑91 (MQ=255)

                                                 cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa                                           >  1:2288929/1‑91 (MQ=255)

                                                 cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa                                           >  1:2284621/1‑91 (MQ=255)

                                                 cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa                                           <  1:1945807/91‑1 (MQ=255)

                                                   ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgg                                          <  1:3580384‑M2/91‑52 (MQ=255)

                                                   ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAg                                         >  1:3540534/1‑91 (MQ=255)

                                                   ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAg                                         >  1:674590/1‑91 (MQ=255)

                                                     aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTg                                       <  1:3828818/91‑1 (MQ=255)

                                                      aaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGa                                      >  1:2117948/1‑91 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggcta                                      <  1:2232512‑M2/91‑56 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     <  1:726656/91‑1 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     >  1:2853385/1‑91 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     <  1:2554729/91‑1 (MQ=255)

                                                           aaTGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaaagt                                  <  1:64877‑M2/91‑60 (MQ=255)

                                                           aaTGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAata                                 >  1:972255/1‑91 (MQ=255)

                                                           aaTGTTTTCTCATATTAATAAGGAAACATTCAgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaaagt                                  <  1:3747826‑M2/91‑60 (MQ=255)

                                                            aTGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAatat                                >  1:995144/1‑91 (MQ=255)

                                                            aTGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAatat                                >  1:1096689/1‑91 (MQ=255)

                                                              gTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATAttt                              <  1:340123/91‑1 (MQ=255)

                                                               ttttCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTg                             <  1:59057/91‑1 (MQ=255)

                                                                  tctcATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGAtt                          >  1:1495256/1‑91 (MQ=255)

                                                                    tcATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTAc                        <  1:1722093/91‑1 (MQ=255)

                                                                    tcATATTAATAAGGAAACATTCAgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaaagtacgaaattt                         <  1:1461339‑M2/91‑69 (MQ=255)

                                                                     cATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACg                       <  1:236861/91‑1 (MQ=255)

                                                                        atTAATAAGGAAATATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTGTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAg                    <  1:2847737/91‑1 (MQ=255)

                                                                        atTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAg                    <  1:2555651/91‑1 (MQ=255)

                                                                           aataaGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGata                 >  1:2662619/1‑91 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTc              >  1:544931/1‑91 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTc              <  1:484007/91‑1 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTc              >  1:2195807/1‑91 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTc              <  1:395392/91‑1 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTc              <  1:2836023/91‑1 (MQ=255)

                                                                                ggAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCaa            >  1:893266/1‑91 (MQ=255)

                                                                                    aCATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTaa        >  1:490980/1‑91 (MQ=255)

                                                                                    aCATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTaa        >  1:490969/1‑91 (MQ=255)

                                                                                    aCATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTaa        >  1:370798/1‑91 (MQ=255)

                                                                                     cATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAAt       <  1:431739/91‑1 (MQ=255)

                                                                                      aTTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTATAGTCAAAATATTTGATTACGAAGATATTCAATTAATa      <  1:3316994/91‑1 (MQ=255)

                                                                                      aTTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATa      <  1:1902790/91‑1 (MQ=255)

                                                                                      aTTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATa      <  1:1904477/91‑1 (MQ=255)

                                                                                          ggTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCta  <  1:1548589/91‑1 (MQ=255)

                                                                                          ggTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCta  >  1:1157943/1‑91 (MQ=255)

TTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCTA  >  USA300TCH1516_ALE/1366440‑1366620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.