BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1392266 =	121 (1.230)	11 (0.130)	9/140	NT	10.1%	intergenic (+40/‑460)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator
*	?	USA300TCH1516_ALE	1392308 =	90 (1.050)	11 (0.130)	9/140	NT	10.1%	intergenic (+82/‑418)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator

Only 100 of 150 total aligned reads displayed.

TTTGGAATTAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAG  >  USA300TCH1516_ALE/1392176‑1392356

tttGGAATTAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATa                                                                                            <  1:432037/91‑1 (MQ=255)

 aaataaatctcaaccttactatattaatatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaaa                                                                                           >  1:3918809‑M1/90‑91 (MQ=255)

  tGGAATTAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATaaa                                                                                          >  1:1647311/1‑91 (MQ=255)

      aatctcaaccttactatattaatatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCt                                                                                      <  1:1980840‑M1/7‑1 (MQ=255)

      aatctcaaccttactatattaatatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCt                                                                                      <  1:3565454‑M1/7‑1 (MQ=255)

      aTTAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCt                                                                                      >  1:529595/1‑91 (MQ=255)

       ttAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTg                                                                                     <  1:627846/91‑1 (MQ=255)

       atctcaaccttactatattaatatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTg                                                                                     <  1:1332794‑M1/8‑1 (MQ=255)

        tAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGa                                                                                    >  1:3708753/1‑91 (MQ=255)

        tAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGa                                                                                    >  1:3708599/1‑91 (MQ=255)

         ctcaaccttactatattaatatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAg                                                                                   <  1:1284727‑M1/10‑1 (MQ=255)

         aGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAg                                                                                   >  1:3659250/1‑91 (MQ=255)

         aGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAg                                                                                   <  1:345537/91‑1 (MQ=255)

          gTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTTATTATATAAAAATCAAATAAACCCTGAgg                                                                                  >  1:3025187/1‑91 (MQ=255)

          gTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAgg                                                                                  >  1:1380703/1‑91 (MQ=255)

          gTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAgg                                                                                  >  1:1176081/1‑91 (MQ=255)

          gTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAgg                                                                                  >  1:3025312/1‑91 (MQ=255)

          gTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAgg                                                                                  <  1:1869423/91‑1 (MQ=255)

          gTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAgg                                                                                  >  1:1846992/1‑91 (MQ=255)

            gCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGtt                                                                                >  1:1587356/1‑91 (MQ=255)

            gCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGtt                                                                                >  1:1651505/1‑91 (MQ=255)

               tGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTc                                                                             >  1:3186614/1‑91 (MQ=255)

                ttactatattaatatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCa                                                                            >  1:2411811‑M1/75‑91 (MQ=255)

                ggggCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCa                                                                            >  1:1592789/1‑91 (MQ=255)

                  ggCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCaaa                                                                          >  1:1913960/1‑91 (MQ=255)

                   gcgcTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAAt                                                                         >  1:2740776/1‑91 (MQ=255)

                    cgcTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAAtt                                                                        <  1:2564213/91‑1 (MQ=255)

                         aCAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGc                                                                   <  1:1295793/91‑1 (MQ=255)

                           aaaTATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGa                                                                 >  1:1894407/1‑91 (MQ=255)

                            tatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGaa                                                                >  1:830669‑M1/63‑91 (MQ=255)

                            tatataatcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGaa                                                                >  1:604201‑M1/63‑91 (MQ=255)

                            aaTATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGaa                                                                >  1:2393616/1‑91 (MQ=255)

                             atatAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGaaa                                                               >  1:1936001/1‑91 (MQ=255)

                                 aaGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAAtct                                                           >  1:3982100/1‑91 (MQ=255)

                                 aaGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAAtct                                                           >  1:806504/1‑91 (MQ=255)

                                  atcaaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGAAAAtctc                                                          >  1:1566676‑M1/57‑91 (MQ=255)

                                   gAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCa                                                         >  1:1810341/1‑91 (MQ=255)

                                   gAACTCTGATAAATAAATATTTTTAACGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCa                                                         <  1:2693839/91‑1 (MQ=255)

                                    aaCTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAg                                                        >  1:1420011/1‑91 (MQ=255)

                                     aaatcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAgg                                                       >  1:1308997‑M1/54‑91 (MQ=255)

                                     aCTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAgg                                                       <  1:1880136/91‑1 (MQ=255)

                                     aCTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAgg                                                       <  1:1217915/91‑1 (MQ=255)

                                       tctGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGt                                                     <  1:4117141/91‑1 (MQ=255)

                                       tctGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGt                                                     <  1:1628087/91‑1 (MQ=255)

                                       tctGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGt                                                     <  1:200143/91‑1 (MQ=255)

                                       tctGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGt                                                     <  1:1175975/91‑1 (MQ=255)

                                       tctGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGt                                                     >  1:823316/1‑91 (MQ=255)

                                        tcttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtt                                                    >  1:3969743‑M1/51‑91 (MQ=255)

                                         tGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGttt                                                   <  1:1396332/91‑1 (MQ=255)

                                         tGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGttt                                                   <  1:2157154/91‑1 (MQ=255)

                                         tGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGttt                                                   <  1:2251526/91‑1 (MQ=255)

                                         cttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGttt                                                   >  1:2641219‑M1/50‑91 (MQ=255)

                                          gATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                  >  1:1323684/1‑91 (MQ=255)

                                               ataaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAtt                                             <  1:1027155/91‑1 (MQ=255)

                                                  aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                          >  1:2728249/1‑91 (MQ=255)

                                                  aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                          >  1:2183824/1‑91 (MQ=255)

                                                  aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                          >  1:3844859/1‑91 (MQ=255)

                                                      tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                      >  1:3270131/1‑91 (MQ=255)

                                                      tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                      >  1:3270355/1‑91 (MQ=255)

                                                      tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                      <  1:104267/91‑1 (MQ=255)

                                                        tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                    >  1:2740273/1‑91 (MQ=255)

                                                        tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                    <  1:2286867/91‑1 (MQ=255)

                                                        tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                    >  1:1889172/1‑91 (MQ=255)

                                                        tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                    >  1:2231305/1‑91 (MQ=255)

                                                        tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                    >  1:1142940/1‑91 (MQ=255)

                                                         ttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAt                                   <  1:2841957/91‑1 (MQ=255)

                                                          tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                  <  1:2946808/91‑1 (MQ=255)

                                                          tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                  >  1:2408670/1‑91 (MQ=255)

                                                          tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                  >  1:2408555/1‑91 (MQ=255)

                                                          tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                  >  1:201735/1‑91 (MQ=255)

                                                           aaTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTa                                 >  1:552049/1‑91 (MQ=255)

                                                            aTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTat                                <  1:222975/91‑1 (MQ=255)

                                                            aTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTat                                >  1:1306226/1‑91 (MQ=255)

                                                            aTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTat                                <  1:438189/91‑1 (MQ=255)

                                                             tGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatc                               <  1:1949664/91‑1 (MQ=255)

                                                              gTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatca                              <  1:3352902/91‑1 (MQ=255)

                                                                  cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                          >  1:1092896/1‑91 (MQ=255)

                                                                  cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                          >  1:1092645/1‑91 (MQ=255)

                                                                  cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                          >  1:1383575/1‑91 (MQ=255)

                                                                   gATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGt                         <  1:25754/91‑1 (MQ=255)

                                                                     ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                       <  1:1915597/91‑1 (MQ=255)

                                                                     ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                       <  1:2293210/91‑1 (MQ=255)

                                                                      tCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATc                      <  1:383877/91‑1 (MQ=255)

                                                                      tCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATc                      >  1:2042127/1‑91 (MQ=255)

                                                                      tCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATc                      >  1:2042304/1‑91 (MQ=255)

                                                                       cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                     >  1:1589550/1‑91 (MQ=255)

                                                                        aTTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCAt                    <  1:908066/91‑1 (MQ=255)

                                                                          tatataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTa                  >  1:702553/1‑91 (MQ=255)

                                                                            tataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATcaca                >  1:3213953/1‑91 (MQ=255)

                                                                            tataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTaca                >  1:2003541/1‑91 (MQ=255)

                                                                            tataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTaca                <  1:246068/91‑1 (MQ=255)

                                                                               aaaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTa             >  1:3654357/1‑91 (MQ=255)

                                                                                  aaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGtt          <  1:509217/91‑1 (MQ=255)

                                                                                    tCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTaa        <  1:3512316/91‑1 (MQ=255)

                                                                                    tCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTaa        <  1:903615/91‑1 (MQ=255)

                                                                                    tCAAATAAACCCTGAGGTTTTCAAACTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTaa        <  1:3849606/91‑1 (MQ=255)

                                                                                       aaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCt     >  1:1259057/1‑91 (MQ=255)

                                                                                        aTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa    >  1:1709137/1‑91 (MQ=255)

                                                                                        aTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa    >  1:2140562/1‑91 (MQ=255)

                                                                                          AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg  <  1:1125527‑M1/91‑1 (MQ=255)

TTTGGAATTAGTGCTTGGGGCGCTAACAAATATAAGAACTCTGATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAG  >  USA300TCH1516_ALE/1392176‑1392356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.