BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1392266 =	121 (1.230)	11 (0.130)	9/140	NT	10.1%	intergenic (+40/‑460)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator
*	?	USA300TCH1516_ALE	1392308 =	90 (1.050)	11 (0.130)	9/140	NT	10.1%	intergenic (+82/‑418)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator

Only 100 of 139 total aligned reads displayed.

GATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTCC  >  USA300TCH1516_ALE/1392218‑1392398

gATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                                                            <  1:2786217/91‑1 (MQ=255)

gATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                                                            >  1:1323684/1‑91 (MQ=255)

     ataaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAtt                                                                                       <  1:1027155/91‑1 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  1:2183824/1‑91 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  1:2728249/1‑91 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  1:3844859/1‑91 (MQ=255)

            tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                                                                <  1:104267/91‑1 (MQ=255)

            tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                                                                >  1:2995521/1‑91 (MQ=255)

            tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                                                                >  1:3270131/1‑91 (MQ=255)

             ttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCa                                                                               >  1:3570781/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              <  1:2286867/91‑1 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  1:2231305/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  1:2231169/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  1:1142940/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  1:2740273/1‑91 (MQ=255)

               ttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAt                                                                             <  1:2841957/91‑1 (MQ=255)

                tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                                                            >  1:2408631/1‑91 (MQ=255)

                tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                                                            >  1:2408670/1‑91 (MQ=255)

                tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                                                            >  1:201735/1‑91 (MQ=255)

                tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                                                            <  1:2946808/91‑1 (MQ=255)

                 aaTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTa                                                                           >  1:552049/1‑91 (MQ=255)

                 aaTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTa                                                                           <  1:3232040/91‑1 (MQ=255)

                  aTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTat                                                                          <  1:438189/91‑1 (MQ=255)

                  aTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTat                                                                          >  1:1306226/1‑91 (MQ=255)

                   tGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatc                                                                         <  1:1949664/91‑1 (MQ=255)

                    gTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatca                                                                        <  1:3352902/91‑1 (MQ=255)

                      aaCGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatcatc                                                                      >  1:2433253/1‑91 (MQ=255)

                        cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                                                                    >  1:1092896/1‑91 (MQ=255)

                        cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                                                                    >  1:1092645/1‑91 (MQ=255)

                        cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                                                                    >  1:1091529/1‑91 (MQ=255)

                           ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                                                                 >  1:3892149/1‑91 (MQ=255)

                           ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                                                                 <  1:2293210/91‑1 (MQ=255)

                           ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                                                                 <  1:1915778/91‑1 (MQ=255)

                           ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                                                                 <  1:1915597/91‑1 (MQ=255)

                           ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                                                                 <  1:185707/91‑1 (MQ=255)

                            tCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATc                                                                >  1:2042304/1‑91 (MQ=255)

                            tCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATc                                                                <  1:383877/91‑1 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                                                               >  1:1589261/1‑91 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                                                               >  1:210707/1‑91 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                                                               >  1:1589550/1‑91 (MQ=255)

                              aTTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCAt                                                              <  1:3693882/91‑1 (MQ=255)

                              aTTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCAt                                                              >  1:1648530/1‑91 (MQ=255)

                                tatataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTa                                                            >  1:702553/1‑91 (MQ=255)

                                 atataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTac                                                           >  1:1768665/1‑91 (MQ=255)

                                  tataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTaca                                                          <  1:246068/91‑1 (MQ=255)

                                  tataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTaca                                                          >  1:2003541/1‑91 (MQ=255)

                                     aaaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTa                                                       >  1:3654357/1‑91 (MQ=255)

                                          tCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTaa                                                  <  1:903615/91‑1 (MQ=255)

                                          tCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTaa                                                  >  1:3326171/1‑91 (MQ=255)

                                            aaaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATc                                                <  1:137257/91‑1 (MQ=255)

                                             aaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCt                                               <  1:1880674/91‑1 (MQ=255)

                                              aTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa                                              >  1:2140562/1‑91 (MQ=255)

                                              aTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa                                              >  1:3135572/1‑91 (MQ=255)

                                              aTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa                                              >  1:1709137/1‑91 (MQ=255)

                                               tAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTaa                                             <  1:816323/91‑1 (MQ=255)

                                                aaaccctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            >  1:2641219‑M2/43‑91 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            <  1:1125527‑M1/91‑1 (MQ=255)

                                                 aaccctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGa                                           >  1:3969743‑M2/42‑91 (MQ=255)

                                                 AACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGa                                           <  1:4038517‑M1/91‑1 (MQ=255)

                                                  ACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAt                                          >  1:3391195‑M1/1‑91 (MQ=255)

                                                  ACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAt                                          >  1:34718‑M1/1‑91 (MQ=255)

                                                   CCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAtt                                         >  1:1802936‑M1/1‑91 (MQ=255)

                                                   CCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAtt                                         <  1:3767142‑M1/91‑1 (MQ=255)

                                                   CCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAtt                                         >  1:2736835‑M1/1‑91 (MQ=255)

                                                    cctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAttt                                        >  1:2574173‑M2/39‑91 (MQ=255)

                                                    cctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAttt                                        >  1:1308997‑M2/39‑91 (MQ=255)

                                                     CTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATGATCATCTGTATCATTACACTAGTTAATCTAAGATTTg                                       >  1:3505882‑M1/1‑91 (MQ=255)

                                                      TGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGa                                      <  1:1047351‑M1/91‑1 (MQ=255)

                                                       gagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     >  1:1566676‑M2/36‑91 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  1:3208695‑M1/91‑1 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  1:3210374‑M1/91‑1 (MQ=255)

                                                         GGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTa                                   <  1:3947461‑M1/91‑1 (MQ=255)

                                                          gTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtat                                  >  1:153559/1‑91 (MQ=255)

                                                          gTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtat                                  <  1:881389/91‑1 (MQ=255)

                                                            tttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtatat                                >  1:128389‑M2/31‑91 (MQ=255)

                                                             ttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtatata                               >  1:604201‑M2/30‑91 (MQ=255)

                                                              tCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTatatat                              <  1:147421/91‑1 (MQ=255)

                                                                 aaTTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTaa                           >  1:3911353/1‑91 (MQ=255)

                                                                  aTTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAat                          <  1:1266509/91‑1 (MQ=255)

                                                                  aTTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAat                          <  1:1266510/91‑1 (MQ=255)

                                                                    tAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAatat                        >  1:3015029/1‑91 (MQ=255)

                                                                      aaGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAg                      >  1:2393581/1‑91 (MQ=255)

                                                                       aGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGt                     <  1:2176586/91‑1 (MQ=255)

                                                                         cGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTaa                   >  1:3529170/1‑91 (MQ=255)

                                                                           aaaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAgg                 >  1:510466/1‑91 (MQ=255)

                                                                           aaaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAgg                 >  1:579924/1‑91 (MQ=255)

                                                                            aaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGt                <  1:716846/91‑1 (MQ=255)

                                                                             aaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGtt               <  1:458348/91‑1 (MQ=255)

                                                                               tctcAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTga             >  1:4061739/1‑91 (MQ=255)

                                                                               tctcAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTga             <  1:1804659/91‑1 (MQ=255)

                                                                                 tcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgaga           <  1:1967864‑M2/82‑1 (MQ=255)

                                                                                  cagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGat          <  1:1332794‑M2/83‑1 (MQ=255)

                                                                                   agggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatt         <  1:3565454‑M2/84‑1 (MQ=255)

                                                                                   agggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatt         <  1:1980840‑M2/84‑1 (MQ=255)

                                                                                        ttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttattt    >  1:3918809‑M2/3‑91 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  <  1:2181787/91‑1 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  >  1:676067/1‑91 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  <  1:1735370/91‑1 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  <  1:3032909/91‑1 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  <  1:4008139/91‑1 (MQ=255)

GATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTCC  >  USA300TCH1516_ALE/1392218‑1392398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.